Lactobacillus kullabergensis: DKL58_03190
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Entry
DKL58_03190 CDS
T06382
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lkl
Lactobacillus kullabergensis
Pathway
lkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL58_03190 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkl03019
]
DKL58_03190 (rny)
Messenger RNA biogenesis [BR:
lkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DKL58_03190 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
AWM75031
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All DBs
Position
629708..631339
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AA seq
543 aa
AA seq
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MMSKFLIPVAIAIISIIVGTVAGYATRKKIWEKKAQNAQNDADHILTEAKARVDAAKAEV
NAQKQAADAIKQSAQNTKKEKILEAQEQIQDYRQKVEDELNDKRDTIARDQNRLTQREDT
LDHKNSLLKEREEDLAKKDEQLEQKQTELTAKLQKADELVEQTTQKLYEVAHLDKEQAKK
LVLNQLADQLVKERAEMISNSNAEVKAKADHYARKIIIDAIQSSSADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDAIRREIAKRAMERLIKDG
RIHPARIEETVDKARKEVNDDIYEAGESALMELGIHKMNPELVKILGRLKYRTSYGQNVL
GHSIEVAKLAGTMAAELGLNEKLAVRAGLLHDIGKAVDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTDLEEIASRYDG
VKQAYAIQAGREVRVMVEPDKISDDRITVLARDIRNQIEKELDYPGNIKITVIREKRAVS
IAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtaaatttttgattcccgtcgcgattgctattatttcaattatagtaggcaca
gttgcaggatacgctacacgtaaaaaaatttgggagaagaaagcccaaaatgcccaaaac
gatgccgatcatattttaaccgaagcaaaagcacgagtcgacgctgctaaggctgaagtc
aatgcacaaaagcaggcagctgacgctataaaacaaagtgcgcaaaacactaaaaaggaa
aaaattcttgaagctcaagaacaaattcaagattatcgacaaaaagttgaagatgaatta
aacgacaaacgtgatacaatagcacgcgatcaaaatcgcttaacacaacgagaggatact
cttgatcataaaaactctttgctaaaagaaagagaggaagatttagctaaaaaagatgaa
cagctggaacaaaagcaaactgaattaactgctaaattgcaaaaggctgatgaattggtc
gaacagactacacaaaaactctatgaagttgctcatttagacaaggagcaggcgaaaaag
cttgtcttaaatcaattggcagaccaattggttaaagaacgagcagaaatgattagtaat
agtaatgcagaagtaaaagccaaggcggatcactatgcacgtaaaataattattgatgct
attcaaagcagttctgctgatacagtagccgaaactacagtatcagtcgttgatttgcct
aatgaggaaatgaaaggtcgtattatcggtcgagaagggcgtaatatcagatcttttgag
gcacttaccggagtagatctaattattgatgatactcctaaagttgtcacactaagtggt
tttgatgcaattagacgtgaaattgctaaaagggcaatggagcgtttaattaaggacgga
agaattcatccagctagaatcgaagagacagtcgataaggctcgtaaagaggtaaatgat
gatatttacgaagctggagaaagcgctctaatggagctgggaattcataaaatgaatcct
gagctggttaaaatattgggtagacttaaataccgtacatcctacggtcaaaatgtttta
ggtcactcaattgaagttgcaaaattagctgggacaatggctgcggagcttggattaaat
gaaaaattagcggttcgcgcgggattattacacgatattggaaaagcagtcgaccatgat
attgaaggttcacacgttgaaataggtgtggaattgactaggaagtatcacgagccggat
gtggttgttaatgcaattgcagcacatcatggagatgtgccgaagttatcgtttattgct
gaattggtagttgcagcggatacaatttcttctgcaagacccggtgccagaagcgaaagt
ttggaaaattatattagaagacttactgacttggaagaaatagctagcaggtatgatggt
gttaaacaggcatatgctattcaagctggacgtgaagttcgcgtaatggttgagcctgat
aaaatttcagatgatcgtattaccgtattggcacgagacattcgtaaccaaattgaaaaa
gaacttgattacccgggtaatattaaaataacagttattcgtgaaaaacgagctgtatca
attgctaagtaa
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