Lactobacillus kullabergensis: DKL58_07140
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Entry
DKL58_07140 CDS
T06382
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lkl
Lactobacillus kullabergensis
Pathway
lkl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lkl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DKL58_07140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lkl03021
]
DKL58_07140 (rpoC)
03400 DNA repair and recombination proteins [BR:
lkl03400
]
DKL58_07140 (rpoC)
Enzymes [BR:
lkl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DKL58_07140 (rpoC)
Transcription machinery [BR:
lkl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DKL58_07140 (rpoC)
DNA repair and recombination proteins [BR:
lkl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DKL58_07140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AWM75760
LinkDB
All DBs
Position
complement(1476718..1480377)
Genome browser
AA seq
1219 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDI
SPRLLEEVIYFAAYIVIDPGDTDLEFKQLLTEAEYREQKAKYGNRFTAKMGAEAIRDLLR
KVDLNKEVTDLKKELETATGQKRTRAIRRLDILDAFKDSGNKPEWMVIDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRSVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRKIATNIKSAKRKIDREDDDVWDVLEDVIKERTVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRMLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAEKGREGEGMIFNSPDEATVAYNNGDIHYHTIIGMS
ADSMPEKAWPKGYEHGIFVTTYGRIIFNQIFPDDYFYVNEPTEENLNNPLASKYFLEPGE
DIHEKIDSVASDLISTPFKKSFLSDSIATIYKYYKVQRTSEYLDDLKTLGYTSSTTSGIT
IGMTDVPEIQDKDEKVAKAHKQVDIVSKQFRRGLITEDERHDRVISIWNDCKDQVQDEIA
QIYDPRNPITIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGINVHAIMEGDELIE
PLYDRLLGRFTAETVKDPKTGATIVGRNVMMDENLAHQICDAGVTNVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRAIISEVDGVIDSIQENPAEHTREITVKGRIDTRSYSVPYTASVAVAEG
DEVHRGDKLTLGSIDPKELIQVTDTLTTEEYILVEVQKAYRMQGVDISDKHVEVLTRQML
QKVRVLDPGETDLLPGEVMDINQFKERNKAVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGLPIYRDMEPESDVKKPKSV
YSIADIEKKMKEADQAKES
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaatttgaaagcatgcaaattggtcttgcctctccgaataaaatt
cgtagctggtcatatggtgaagtcaaaaaaccagaaactattaattaccgtactttaaag
ccagaaaaagacggtttgttcgatgaaagaatttttggaccgactaaagattggtcatgt
gcatgtggtaaatataagggtgtgagataccgtggcatcgtttgtgatcgctgtggtgtt
gaagttacctcctctaaagttagaagggagcgaatgggtcatattgaattggctgcccca
gttactcatatttggtactttaaaggtattccatcaagaatgggacttattttggatatt
tctcccagacttctcgaagaagttatctattttgcggcttatattgtaattgatccaggc
gacactgaccttgaatttaaacaacttttgacggaagctgagtaccgtgaacaaaaggca
aaatatggcaatcgttttaccgcaaaaatgggtgcagaagcaattcgtgatttactccgt
aaggttgatttgaataaagaagttaccgatttaaagaaagaattggaaactgcaaccggt
caaaaacggactagagcaatcagacgtcttgatattcttgacgcctttaaagattctggt
aacaagcctgaatggatggttattgatgctgttccggttataccaccagatttaagacca
atggtccaactagaaggtggtcggtttgcaacttctgatttaaatgacttataccgtcgt
gttatcaaccgtaacaacaggttaaagagattacttgacttaaatgctcctaatattatt
gtgcaaaatgaaaaacgtatgttgcaagaagccgttgatgcattgattgataatggtcgt
cgtggtcgttctgtggttggaccaggtaatcgtccacttaaatctttatcacacatgctt
aagggtaagcagggacgtttccgtcaaaacttattaggtaagcgtgttgactattcaggt
cgttcagttattgatgtttcaccaaagcttaagttctatcaatgtggtgttcctcgcccg
atggctctagaattgttcaaaccatttgtaatgcacgaattagttaaacgcaagattgct
acaaatattaagagtgctaagcgtaaaattgatcgtgaagatgatgatgtctgggatgta
cttgaagacgtgattaaggaaagaacggtattattaaaccgggctcctactttacaccgt
ttgagtatccaagcttttgaacctgttttagtgccgggcaaatcaattcgtctgcaccct
cttgcctgtgaggcttacaatgccgactttgatggtgatcagatggctatccacgtgcca
ctatctgacgaagctgttgctgaatcacggatgctaatgctggctgctcaccatattttg
gctcctaaggacggtaagccaattgttactccatctcaagatatagttttgggtaattat
tggttaactcaagctgaaaagggccgtgaaggtgaaggaatgattttcaactcacctgat
gaagcaaccgttgcatataataatggtgacattcattatcacaccattattgggatgtca
gctgattcgatgccagaaaaggcatggccaaaaggatatgaacatggtatttttgtcact
acttatggtcgaatcattttcaatcagattttcccagatgactatttctatgttaatgag
ccaactgaagaaaatttaaataacccacttgcttccaagtatttcttggaaccgggcgaa
gatatccatgaaaaaattgatagtgttgcaagtgatttgatttctacaccgtttaagaaa
tcattcctgtctgattcaattgctacaatttataaatattataaggttcaaagaacatct
gaatatcttgatgacttaaagactttaggttataccagttcaactacttctggtattaca
atcggcatgaccgatgttcctgaaatccaagataaagatgaaaaggttgctaaagcccat
aaacaagtagatattgtgtctaaacagtttagacgtggtttaatcactgaagatgagaga
cacgaccgggtaattagcatttggaatgattgtaaagatcaagttcaagatgaaattgcc
cagatttatgacccacgtaatcctattactatcatggccgattcaggagctcgtggtaac
atttccaactttacacagcttgccggtatgcgtggattgatggctacaccaaacggtggg
ttgttcgaaattccagttacttctaactttaaggaaggtttgtcagttctagaattattc
atgtctactcatggtgctcgtaagggaatgaccgataccgccttgaagactgctcagtct
ggctacttgactcgtcgtctagtagatgttgcacaggatgttattattcgtgatgatgac
tgtgggactgaccgtggcattaatgttcatgcaattatggagggtgacgaattaattgaa
ccgctctatgatcgtttacttggccgctttactgccgaaacagtgaaggatccaaagact
ggtgcgacaattgttggtcgcaatgtcatgatggatgaaaacttagcacatcagatttgt
gatgctggtgtaactaacgtgaagatccgttcgatcctaacttgtgatacaccacatggt
gtttgtcgcaagtgttacggtatgaaccttgccactggagaagaagtcgaagttggtgaa
gcagttggtacagttgctgctcaatctatcggtgaacctggtactcagcttactttacgt
actttccacaatggtggtgttgcaggtgctgaagatattacgcaaggtcttcctcgtgtg
caggaattgtttgaagctcgtaatcctaagggtcgtgcgataatttctgaagtagatgga
gtaattgattcaattcaggaaaatcctgctgaacatactcgtgaaattactgttaagggt
aggatcgatactagaagttacagcgtgccttatactgcttcggtagctgttgctgagggt
gacgaagttcatcgcggtgacaagttgactcttggatctattgatccgaaagaattaatt
caggttactgatacattaactactgaagagtatattttggtcgaagtccaaaaagcatac
aggatgcaaggtgttgatatttcagataagcacgttgaagtattaactagacaaatgttg
caaaaagttcgtgtgctcgatcctggagaaactgatcttttacctggtgaggtaatggat
atcaatcagtttaaggaacgtaacaaggctgtaattatttctggtggtattcctgcaacc
gcacaaagtgtaattttgggtattactaaagccgctcttgaaaccaacagtttcttgtca
gccgcttccttccaggaaacaactcgtgttctaactgatgcttctatcagaggaaagaat
gatccgctacttggattaaaagaaaatgttattattggtaagataattccagctggtact
ggtcttccgatttatcgtgatatggaacctgagtcagatgtaaagaaacctaaatctgtt
tattcaattgctgatattgaaaaaaagatgaaggaagcagaccaagctaaggaatcataa
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