Lactobacillus kullabergensis: DKL58_07245
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Entry
DKL58_07245 CDS
T06382
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lkl
Lactobacillus kullabergensis
Pathway
lkl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL58_07245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkl03019
]
DKL58_07245
03009 Ribosome biogenesis [BR:
lkl03009
]
DKL58_07245
Enzymes [BR:
lkl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKL58_07245
Messenger RNA biogenesis [BR:
lkl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKL58_07245
Ribosome biogenesis [BR:
lkl03009
]
Prokaryotic type
rRNA helicases
DKL58_07245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
DeaD_dimer
CbiQ
Motif
Other DBs
NCBI-ProteinID:
AWM75778
UniProt:
A0ABM6W1U1
LinkDB
All DBs
Position
complement(1505562..1507040)
Genome browser
AA seq
492 aa
AA seq
DB search
MKFSELGLKDELLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFALPIL
QNLDKHNKVIQALIIEPTRELAIQTQEELFRLGRDENARVQVVYGGADIGRQIRSLKNHV
PAILVGTPGRLLDHLKRKTIDLENVNTIVLDEADEMLDMGFIQDIESILSYVKNRKQTLL
FSATMPKPILNISEKFMNNPEIVRIKTKELTADLIDQYFVRAKDSEKFDIMCRLIDVESP
DLAVVFVRTKRRVDEVTRGLQARGYNAAGIHGDLSQARRLTVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGSSITFVTPNEIGYMRTIEQLTK
KKMTPLRPPSDDQALRGQLKVAKSKIEDIMKEDLSKYTDDANELLENYSAVDLVSAFLKN
LSKDSANVEVKISSEKPLPYKGNGRGGRGHYSRGRNSRGYRGDRNRSRGNYRGGHSRRSG
NGKNFIIKNKKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcagaattaggattaaaagatgagctgttaaaggcaattaagcgttcaggc
tttgaggaagctacgccaattcaggaacaaactattcctttagctttagctggcaaagat
gtaattggacaggctcaaacaggtaccggtaagacggcagcttttgctttaccgatcttg
caaaatttagataagcacaataaagtaattcaggcactaattattgaaccgactcgtgaa
ctagctattcaaacacaagaagagctttttagacttggtcgtgacgagaatgcacgggta
caggttgtctatggtggtgctgatattggtcgtcaaattcgttctcttaaaaatcatgta
ccagcaattttggtaggtacaccgggacgtttacttgatcatttaaaacgtaaaacgatt
gatttggaaaatgttaataccattgttttagatgaagctgatgaaatgttagacatgggt
ttcatccaagacattgaaagtattttgagttacgttaaaaaccgtaaacagaccttgtta
tttagtgccacaatgccaaaaccaattttgaacattagtgaaaaattcatgaacaatcct
gaaattgtgcgcattaagactaaagaattaactgctgacttaattgaccagtattttgtg
cgtgctaaagattcagaaaaatttgacatcatgtgtcgcttgattgatgttgaaagtcca
gatttggcagtggtttttgtcagaactaaacggcgcgttgacgaggttaccaggggactt
caggcacggggatataatgccgcggggattcatggcgatctctctcaggcgcggagactt
actgtattaaagagatttcgcgctggcaagctggatattttagtggcaacagatgttgct
gcacgtggtctggatatttccggtgtaacacatgtatacaattatgatatcccccaagac
cctgattcttatgttcaccgcattggtcgtactggtcgtgctggtcaaaatggtagttcc
atcacttttgttacgccaaatgaaattggttatatgagaacgattgagcagttaactaag
aaaaaaatgacgcctcttcgtccaccatctgatgatcaagccttacgtggccaattgaag
gtcgctaagtccaagattgaagatattatgaaagaggacttatccaaatataccgatgat
gcaaatgaattgttagaaaactattcagcagttgatttggtatctgcctttttgaagaat
ttgtccaaagactctgcaaatgttgaagtcaaaatcagttcggaaaagcctttgccatat
aagggcaatggtcgtggaggtcgtggtcattatagtcgcggaaggaatagtcgtggctat
cgcggtgaccgtaaccgtagccgtggcaattatcgcggaggacattctcgccgttctggt
aatggcaaaaacttcattattaaaaataaaaaaggttaa
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