Leptospira kmetyi: EFP84_04525
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Entry
EFP84_04525 CDS
T05705
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
lkm
Leptospira kmetyi
Brite
KEGG Orthology (KO) [BR:
lkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lkm03016
]
EFP84_04525 (rlmD)
Enzymes [BR:
lkm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
EFP84_04525 (rlmD)
Transfer RNA biogenesis [BR:
lkm03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
EFP84_04525 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MethyltransfD12
Methyltransf_25
Methyltransf_15
Methyltransf_11
Methyltransf_12
PDGF
MTS
PabTrmU54_TRAM_dom
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
AYV54852
UniProt:
A0AAD0URL9
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All DBs
Position
1:972546..973943
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AA seq
465 aa
AA seq
DB search
MSDTNPRPHRLDGIAEVEKIGTNLRGILTFEKNRIEVPYSLPGDSYNVTLFKKKRRKPSA
KLELISQVSRSVTPPCPAFTRCGGCSAQHIPYEEQFIYKTTRLSESYKNDFGIEPVLISA
RKTLHYRNRMDFAVFPGPIIGQRESGSFRHIVDLETCFIQSEESNEELKRFRNLLSQFPD
LPYDRRSDSGFLKYVTLRKAKNTSDLMTILSFVEEFKDSSGEKEFAEACLKHLKADHLLF
CFNRRKGEISAIGDVKVLRGKESYQELVSGKEFRVPFDSFFQPNPEGFQPILDFIETEIP
ESADHLIDLFCGSGFFSRIFAHKFKKITGIDSIESSLQIARKQMEFDFPNIQFSYLREDL
FSKKASTGLENLFQAEENNVLIADPPRAGLGEFVIEALKHSKISFFLYVSCNPSSQKEDL
MKLKDTFRIQKILITDPYPQTPHLESVAFLSAKDAPSLENSILRT
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacacaaatcctcgccctcatagactggacggcatcgctgaagtcgaaaaaatc
ggaacaaacctccgaggcattcttacctttgaaaaaaaccgtatcgaagtcccttattct
cttccgggcgattcgtataacgtcacactgttcaaaaagaaacgaagaaaaccttccgca
aaattagaattaatttcccaggtttccagaagcgtaaccccaccttgtcccgcgtttaca
cgatgcggaggctgttccgcacaacatattccttacgaagaacaattcatttataaaacg
acccgactttccgaaagttacaaaaacgatttcggaatagagccggttttaatttcggct
cggaaaacattacattatagaaatcgaatggactttgccgtatttccgggaccgatcatc
ggacaaagagaatccggttcattcagacatattgtggatttggaaacttgttttatccag
agcgaagaatccaacgaagagctaaaaagattccgcaacttgctttctcaatttccggat
cttccctatgatcgcagatcggattcaggatttctaaagtatgtaacgcttaggaaagcg
aagaacacttccgatttgatgaccattctatcctttgtggaagaattcaaagattccagc
ggagaaaaagaatttgccgaagcctgtttaaaacatctaaaggcggatcatcttctgttt
tgtttcaaccgaagaaagggagaaatatcggcgatcggagatgttaaggttctccgagga
aaagaatcttatcaagaacttgtttccggaaaagaatttcgagttcctttcgattctttt
ttccaaccgaatccggaaggctttcagccgattttggattttatagaaacggaaattccg
gaatcggcggatcatctgatcgatctattttgcggttccggttttttcagcagaatcttc
gcgcataaattcaaaaaaatcacgggaatcgattcgatcgaaagttccttgcagattgcc
cgcaaacaaatggaattcgattttccgaatattcaattttcttatttaagagaagacttg
ttttccaaaaaagcgtcgaccggtttggaaaatctttttcaagccgaggagaataacgtc
ttgatcgccgatcctcctcgggccggactcggagaattcgtgatcgaggcgctgaaacat
tctaagatttctttttttctttatgtttcctgcaatccgagttcgcaaaaagaggatttg
atgaaattaaaggatacgtttcgaattcaaaaaattctaatcacagatccatatccgcaa
acgccccacctggaatcggtcgcatttttgagcgccaaagacgctccatcgctcgagaat
tcaattctccgaacgtga
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