Leuconostoc koreense: FGL74_06510
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Entry
FGL74_06510 CDS
T10571
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lkn Leuconostoc koreense
Pathway
lkn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGL74_06510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lkn03400
]
FGL74_06510 (mfd)
Enzymes [BR:
lkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGL74_06510 (mfd)
DNA repair and recombination proteins [BR:
lkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGL74_06510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEA59368
LinkDB
All DBs
Position
1258563..1262090
Genome browser
AA seq
1175 aa
AA seq
DB search
MTLIDFLSDTLTIKKLNKQATVNSVQLLLGVNGTARAASIAALYRKNPRPMLVISDTQVH
ADQFFDDLSSLLENQVYNFPAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVTSLA
GAERLVPKKQALEQAHLHVKVGDAYDLNVIKDTLMMMGYTPTKLVQTPGEFAHRGSIIDV
YPITSDDPIRLDFFDDELDQLKSFDVTTQKSSTSLDEINIDPATDFIVSERQYDQAKLAI
ESAFSDYRTNLSGIDKKHATDGFASTQYMLNERERGSRLVPYATFFFDGQTTLLDYFPVD
SLLIIDEYTRLMETRLQQMTRDQEWIEQQVESYQLLPKQTFRAEIADLLSSNQHATIYLA
NFQRGLNRIQFTNIEEVTTRPANQYYGQIKALKNDLIYAQESGNTMVLLIPDAKRRANFS
RSLSELEVPITETRDVVTNKVQMMPGELSAGFEWPKLHLTVLTTHELFTQAKRSTPRTRK
IANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTVAYQQNAKIFIPVT
QLNLIQKYVGASDVAKKPKLNKLGGSEWAKTKRQVAAKIEDIADDLLELYAKREAQQGYA
FPPDDYDQIKFDDSFGYPETPDQIRSIEEIKSDMQKLRPMDRLLVGDVGFGKTEVALRAV
FKAAHAGKQVAFLAPTTILVQQHYETMLARFSDFPEIKIGVLSRFQTPAQNKIIIEQLQN
HEIDVVVGTHRLLSKDVDFVDLGLLIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPR
TLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEIARNGQVFYLHNRVAD
LDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNAN
TLIIENADHMGLAQLYQLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGS
GFRIAMRDLSIRGAGDLLGKQQHGFIDSVGYDMYTQMLKDTVAQKQGKQVTTTKPETDAE
LILGVLAYLPDEYVSDNAQKIELYSRIRQARTDAEFEDIESDMLDRFGEMPDEVARLLLV
GQIKQLADQSQITNIRRQRKQLIITFNESATTSLAGEAIFETMVDVPLKAAVRTEKNNLQ
VIFTVNDVAESSIWLNILRNFLLVIIDKLSAKTFN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgacattaatagactttttaagtgacacactaacaattaaaaaacttaacaaacaggca
actgtgaattcggtacagttgcttttgggcgtgaatggaactgctcgtgccgctagtatt
gctgccttatatcgtaaaaatcctcgaccaatgttggttatatctgacacgcaagtgcat
gctgatcaattttttgatgatttgtcatctttgcttgaaaatcaagtctacaactttcca
gcagaagagtctattgctacagaaatggccatcagttcctctgaattacgactacaacgt
gtacaaacattactcgctttaaaaacagaaaaaccaataattgtggttacaagtttggca
ggggcagaacgtttggtgcctaaaaaacaggcattggaacaagcgcatttacatgttaaa
gttggggatgcttacgatttgaatgtcattaaagacactttaatgatgatggggtatacg
ccgactaaattggtccaaaccccaggtgaattcgcacatcgaggatcaattattgatgtt
tatccaattacttctgatgatccaattcgacttgatttttttgatgatgaattggatcaa
ttaaaaagtttcgatgttacaacgcaaaaaagtagtaccagtttggacgaaatcaatatt
gatccggcgacagattttattgtatcagagcgtcagtatgatcaagcaaagttagcgatt
gaaagtgcttttagcgattaccgtaccaatttaagcggaattgataaaaagcatgccaca
gatggatttgcttcgacacagtatatgctgaacgaacgagaaagagggagtaggttagta
ccgtacgctacttttttctttgatggccagacaaccctacttgactatttcccagtcgat
tcgctactcatcattgatgaatacacacgattaatggaaacacgactgcagcagatgaca
cgtgatcaggaatggatcgagcaacaagttgaatcgtatcagttattaccaaaacaaacg
tttcgagctgaaatcgcagacttattatcaagtaatcaacatgcgacgatttatttagct
aattttcagcgtggactcaaccgaattcagtttaccaatattgaagaagtgacaacgcgt
cctgccaaccagtattatggacaaattaaagcattgaaaaatgatttaatatatgcacag
gaatctggtaatacaatggtattattaattcctgatgccaaacgacgggctaatttctca
cgcagtttatctgaattagaagtgccaattactgaaacacgagatgtggtgacaaacaaa
gtacaaatgatgccaggtgagctatcagctggatttgaatggccaaaattacatttgacc
gtactaactacacatgaactatttacacaagcaaagcgttctacaccgcgaacccgtaaa
atagctaactcagagcgtttgaaatcctataatgagttaaatgtgggtgattacgttgtt
cacattaatcatggtattggccgctatgaaggcttgcaaaccattgaagcagatggtggt
aaacaggattatttgacggttgcttatcagcaaaatgcgaaaatatttattcctgtcaca
caacttaatctaattcaaaaatatgttggtgcatctgatgttgctaagaaacctaagttg
aataaattaggtggtagtgagtgggctaaaacaaaaaggcaagttgcggcaaaaattgaa
gatattgctgatgatttattagagttatatgctaaacgcgaagcgcagcaagggtacgct
tttccacctgatgattatgatcaaattaagtttgatgattcgtttggctatccagaaaca
cctgatcaaattcgtagtatcgaagaaattaaatctgatatgcaaaagctacgaccaatg
gatagattacttgtgggagatgttggttttggcaaaacagaagttgctttacgtgctgtt
tttaaagctgcccacgctggtaaacaggttgcttttctagcgccaactacaattttggtt
caacaacattatgaaacaatgttggctagatttagtgattttccagaaattaaaattggt
gtattaagtcggtttcaaacacctgcccagaataaaatcattattgaacagcttcaaaat
cacgaaattgatgtagttgtcggtacgcatcgtttgttgagtaaagatgtggactttgta
gatcttggtctactgatcatagatgaggagcagcgatttggtgttaagcataaagaaaga
ctaaaacagttacgaacaagtgttgacgtcctaacactaactgcaacgccaattccacgt
acgcttaatatggccatggttggtgcccgtgatctatctgtcattgaaacaccacctgca
aatcgatatccaattcaaacttatgttttggcaatggattggaaaatagttcgtgatgcg
attgaaaaagaaattgcacgtaacggccaagttttttatctacacaatcgtgttgctgac
ctagaccgtattgttagtcaaatagaagagttaatcccgtcggcaagggtagctgcaatt
catgggcaaatgtcagaaacacagcttgaaagcattctctatgactttttgaatggacaa
tatgatgttctagtaacaaccacaattattgaaacaggtgtcgatattcctaatgcaaat
actttaattattgaaaatgctgaccacatgggtttggcacagctttatcaattacgtggt
cgtgttgggcgttcgacacgtttagcgtatgcatattttacttatccgtttacgcggaca
ccttcagaagaagccgaaaaaaggcttgaagccatacgcgatttcacggaactgggttca
gggttcagaatcgctatgcgtgatttaagtattcgcggtgccggtgatttgctcggtaag
caacaacacggatttattgattcagtggggtatgacatgtatactcaaatgttgaaagat
actgtggcacaaaaacaaggaaagcaagttacgacaaccaaaccagagacggatgcagaa
ttaatcttaggtgtgctggcctatttgccagatgagtacgttagcgataatgcacaaaaa
attgaattatattcgcgcatccggcaggctagaacagatgcagaatttgaagatattgaa
tctgatatgctagaccgttttggtgaaatgccagatgaggtagctcgtttattgctcgta
ggtcaaattaagcagttagctgatcagtcacaaattacgaatatacgacgtcaaaggaaa
caattaatcataacttttaatgaatcagctacgacaagcttagcgggtgaggccatattt
gagacaatggttgacgtgcctttaaaagcagctgtgcgaacagaaaagaataatttacaa
gtgattttcactgtgaatgatgtcgcagaaagtagtatctggctcaatattttacgtaac
tttttgttagttattattgacaaattatcagcaaaaacattcaattga
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