Levilactobacillus koreensis: ABN16_00130
Help
Entry
ABN16_00130 CDS
T03995
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lko
Levilactobacillus koreensis
Pathway
lko03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABN16_00130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lko03400
]
ABN16_00130
Enzymes [BR:
lko01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ABN16_00130
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABN16_00130
DNA repair and recombination proteins [BR:
lko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABN16_00130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
DZR
DUF7573
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AKP63566
UniProt:
A0AAC8UTG5
LinkDB
All DBs
Position
complement(22655..23515)
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVETVRRGLNRLVAGATIDHVEVFYPKMVTPDRDEFTAELIGRQIERIDRRGKYL
LFRFSGDLTMVSHLRMEGKYDVQAEGSPITKHTHVVFHLKDDRELRYTDTRKFGRMRLVP
TGQEAAEMPSLAKMGPEPTEEALTLAYMQTIFGKSHKVVKPFLLDQSRIAGLGNIYADEV
LWLSKINPLTPADELTKAQLATLRRNIIEEMALAIQGHGTTVHSFSTAFGEAGQFQNHLH
VYGREGEPCERCGTEIEKIKVAQRGTHFCPKCQPLPAAALEAFDRD
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaaacggttcggcgcggactgaatcggttagtggccggt
gccactattgaccatgttgaggtattttatcccaagatggtgacgccagaccgtgatgag
ttcacggctgaattgattggtcggcagattgagcggatcgaccggcggggcaagtacctc
ctatttcggttcagcggcgacctcacgatggtgtcccatctgcggatggagggcaagtat
gacgtccaagccgagggcagtccgatcaccaagcacacccacgtggtctttcatttaaag
gatgaccgggagctgcggtacacggatactcgtaaatttggtcgtatgcggctggtgccg
acgggccaagaggctgcggagatgccatcgttggctaaaatggggccggaaccgaccgaa
gaagcgctgacgttagcgtatatgcaaacgatttttggaaaatcacacaaagtggtcaaa
ccgtttttactcgaccaatcgcggatcgctggcttaggcaacatctatgccgatgaagtg
ttgtggctgtcaaagatcaatccattgacgccagccgacgaactgactaaagctcagttg
gcgacgttgcgacggaacatcattgaagaaatggcgctggcaattcagggtcacgggacc
accgtccattcattttccacggcatttggtgaggctggtcagttccagaatcatctgcac
gtctatggtcgcgagggtgaaccctgtgagcgctgtgggaccgagattgaaaaaatcaag
gtcgcccaacgcggcacgcatttctgtccgaagtgtcagccgttaccagcggcagctttg
gaggcgtttgaccgtgactga
DBGET
integrated database retrieval system
