Levilactobacillus koreensis: ABN16_02245
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Entry
ABN16_02245 CDS
T03995
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lko
Levilactobacillus koreensis
Pathway
lko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABN16_02245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lko03019
]
ABN16_02245
03009 Ribosome biogenesis [BR:
lko03009
]
ABN16_02245
Enzymes [BR:
lko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABN16_02245
Messenger RNA biogenesis [BR:
lko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABN16_02245
Ribosome biogenesis [BR:
lko03009
]
Prokaryotic type
rRNA helicases
ABN16_02245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AKP63928
UniProt:
A0AAC8ZG09
LinkDB
All DBs
Position
complement(464294..465883)
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AA seq
529 aa
AA seq
DB search
MKFKELGLSDDLLKAVTTAGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL
EKIDKSNENVQALVVSPTRELAIQTQEEIYKLGRNERANVQVVYGGADIRRQIKSLKNHP
QVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPVERQTMLF
SATMPPEIKRVGVQFMQDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPD
LTIVFTRTKRRVDEISSGLQARGYNAAGIHGDLTQKRRTQIMNEFRHGQLDILVATDVAA
RGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTKV
RMLPLKPPSDEEALVSQLGAAKDKVTELVNKTDTEKFAKTAEGLLSEFDAEDLVAALLND
LTKDDSNQVPVKITPERPLPKRGGKRHGGGGYHHGGGNRRGGNGGGGYRGHRSNDSRGGR
GGSRSHDSRNHDSHDSRSHGDNRNRRSNGSNGGRRNEGGSRGFTIRKKD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactgggtctttccgatgacctactgaaagcagttacgacagcaggt
tacgaggaagcgaccccaattcaagccgagacaatccccatggttttggctggtcaagat
gtgattggacaagcccaaaccgggactgggaagactgcggccttcgccttacctatcttg
gaaaagattgataagagtaacgaaaatgttcaggcgttggtggtttctccaacacgggaa
ctcgctatccaaacccaagaagaaatttataaattaggccggaacgaacgggctaacgtc
caagtcgtttacggtggggctgacattcgtcgccaaatcaaatccttaaagaaccacccg
caagtggttgttgggaccccgggtcgtttattggatcacattcgtcgtcacacgttgaag
ctcgaccacgtccaaatgttagtcttggacgaagccgacgaaatgttaaacatgggtttc
ttggatgatattgaagacatcatcaaacaattgccagtagaacgtcaaacgatgctcttc
tccgcaacgatgcctcccgaaattaagcgggtgggtgttcaattcatgcaagatcctaag
cacgtgaagattaaggctaaagaattaacgaccgacttgatcgatcaattctacgtccgt
tcccgtgactttgaaaagtttgatgtgatgacgcgtttcttcgacgtccaatcaccagac
ttgaccattgtcttcacacggacgaagcgccgggtcgacgaaatttccagtgggttacaa
gcccgcggttataacgctgccggtattcatggtgatttgacgcaaaagcgccggacacaa
atcatgaacgaattccgtcacggtcaattggatatcctggtcgcaaccgatgtggctgcc
cgtgggattgacattaacgacgtgacccacgtttacaactacgatattcctcaagatcca
gatagttacgttcaccgtgtcggccgtactggtcgtgccgggaagcatggggtctccatg
acttttgtgacgcctaacgaaatggactacttgcgtgaaatcgaaaagctgacgaaggtg
cgcatgctgcctttgaagccaccttcggatgaagaagctttggtgagccaattaggcgca
gccaaggacaaggttaccgaactggtcaacaagacggataccgaaaagtttgcgaagacg
gctgaaggcctgttgagcgaattcgatgccgaagacttagttgccgctcttttgaacgac
ttaactaaggatgacagcaaccaggttcccgttaagatcacgccagaacgaccactgcct
aagcgcggtggcaaacgtcatggcggtggcggttaccatcatggtggcggcaaccggcgt
ggtggcaatggtggcggcggttaccgcggtcatcggagcaacgactcacgcggcggccgt
ggtggctcacgttcccacgattcgcgcaatcatgattcacatgactcacgtagtcatggc
gataaccgaaatcgtcgtagtaacggcagcaacggtggtcggcgtaacgaaggtggaagc
cgcggcttcaccattcggaagaaagactag
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