Levilactobacillus koreensis: ABN16_11505
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Entry
ABN16_11505 CDS
T03995
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lko
Levilactobacillus koreensis
Pathway
lko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABN16_11505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lko03019
]
ABN16_11505
Messenger RNA biogenesis [BR:
lko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABN16_11505
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AKP65557
UniProt:
A0AAC8UXL7
LinkDB
All DBs
Position
complement(2555266..2556945)
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AA seq
559 aa
AA seq
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MNKLNVKNNEAAIFGVGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDELLGIDYVIPDYQ
YLVENQAKIKALVITHGHEDHIGGIPYLLKALNVPVYAGPLALALIKNKLEEHGLLKSTE
LHTIDDDTVLKFRKMSVTFFRTTHSIPDTLGVAVHTPVGTIVETGDYKFDLTPVTNQPPD
LQKMARLGEEGVLCLMSDSTNAERPIWTKSEKWVGKSIRRIFDQVEGRVIFATFASNISR
IETACETALAHGRKIAVFGRSMEAAIVNGRELGYLNIPDDALVDANAIRSLPAEKVMILC
TGSQGEPMAALSRIANGTHRQISIQPGDTVVFSSNPIPGNTISVNRVINELEEAGANVIH
GKVNNIHTSGHGGQEEQKLMLRLMQPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFILQ
NGDVLALTQDSARVAGHFTAGDVYIDGSGIGDIGNVVLRDRQLLSEEGLVVVVATIDLKN
QEIKAGPDLLSRGFVYMRESGELLNEGRRRVFQTIRRAMRNPKATEASIRNAVIDDLQNF
LFEKTERHPMILPMFIMTK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagttaaacgtcaaaaataacgaagccgctatctttggcgtgggtggacttggt
gaaatcgggaaaaacacttacggtattcaatttcaggatgaaattatcctgatcgatgcc
ggaattaagtttcccgaagacgagttactcgggatcgactatgtcattccggattatcag
tacctcgttgaaaatcaagccaaaatcaaggcgcttgtgattacccacggccacgaagat
catattggcggtattccttatttattaaaggcgctcaacgtccctgtttacgcaggaccg
ctcgccttggcactgatcaagaacaagcttgaagaacacggattacttaaatcgactgaa
ctacacacaattgacgatgacactgtgctcaaatttcggaagatgagtgtcaccttcttc
cggaccacccactcgattcctgatactttaggtgtcgcagttcataccccggtcggaacg
atcgtggaaacgggagactataagttcgacttaactcccgtgacgaaccagccgcctgat
ctacaaaagatggcacgactgggtgaagaaggcgtgctgtgcttgatgtctgatagcacg
aacgctgaacgaccaatctggaccaagtcggaaaagtgggtcggtaaatcgattcgacgg
atttttgaccaagttgaaggtcgggttatctttgccaccttcgcttccaatatctcgcgg
atcgaaacggcctgtgaaacggcgctggctcacggacggaagattgccgtctttggtcgg
tccatggaagctgccatcgttaacggtcgggaattaggttacctcaacattcccgatgac
gcgttagttgacgccaacgccattcgttccctccctgctgagaaagtcatgattctatgt
actggctcacaaggtgaaccgatggctgctctatcacgcattgcgaacggtacccaccgg
caaatctccattcaacccggtgatacggtcgtcttctctagcaacccgatccctgggaac
accatttcggtcaaccgggtcatcaacgaactggaagaagccggcgccaacgttatccat
ggtaaggtcaacaatatccatacatctggtcatggtggtcaagaagaacaaaagttaatg
ctgcgactgatgcagcccaagttctttatgcctatccacggtgagtaccggatgttgaag
atccatacggaactcgcagaacaatgtggtgtgccgttggatcacagctttatcctgcaa
aacggggatgttctggccttaactcaggactccgctcgtgttgcgggccacttcaccgct
ggagacgtctacattgacggttccggtatcggtgatattgggaatgtcgttttgcgtgac
cggcaactcttgtccgaagaaggactcgtcgttgtcgtcgccaccatcgacttgaagaac
caggagatcaaagcgggtcccgacctgctttcacgtggatttgtctacatgcgcgaatct
ggcgaacttctcaatgaaggtcgccgccgcgtcttccagaccattcggcgggcgatgcgc
aatccaaaggctaccgaagcctcgattcgcaacgccgtcatcgacgatctgcaaaacttc
ctgtttgaaaagacggaacgtcacccaatgattttaccaatgtttattatgaccaagtaa
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