Levilactobacillus koreensis: ABN16_11625
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Entry
ABN16_11625 CDS
T03995
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lko
Levilactobacillus koreensis
Pathway
lko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABN16_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lko03019
]
ABN16_11625
Messenger RNA biogenesis [BR:
lko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABN16_11625
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKP65580
UniProt:
A0AAC8ZH25
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Position
2579346..2581211
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AA seq
621 aa
AA seq
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MSAKIKIIPFGGVRENGKNMYAVDVNGGIYILDCGLKYPENELLGIDVVIPDWAYLRENK
DRIVAVFLTHGHADAIGALPYFLSEFNVPVFGSEMTIALAKIDVAAEPKVKDYDDFHVID
EKTEIDFGDVVVSFFSTTHSIPESLGIDLKTDEGQIIYTGDFKFDQTAKPGYQTDYARLG
AIGQAGVLAVLSDSANAENPAMNASEQTIAESIEETFHYRDGRVVVACVASNILRIQQVF
DAAAKTGRKVCLTGQDLEAIVNTAMKLGKLSFDDDLLVTTAQLDQLSPAEIVILQTGKMG
EPIKAIQRMANKQEKDLNIQEGDLVYITTTPSHAMDTTVAQTRDMIYRAGGEVKAISDEL
NSSGHAYKRDLQLMLNLLKPKYLVPIQGEYRLLNAHANAAMELGMAADHIFILAKGDVLT
YANGEMGLGEGIDVSDTMIDGIGVGDIGNIVLRDRKVLADDGIFIAVVTIDRKKKQIVAD
PKITSRGFVYVKANKDLMQESAQIIRKAVQNNLDNKEFDWGHLKQDVREHLSHYLFEQTH
RRPVILPVIMEVNQHHRRTTGKEKTPANQATPAKAKAPKAPKSKDKPAPKKDVADKSAHK
AHRNRKRRRTPKPATTETDKA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaaagatcaagattattccgtttggcggtgttcgcgaaaacggtaaaaacatg
tacgccgttgatgttaacggtggaatttatattttagattgtgggttgaagtacccggaa
aatgagttgttgggaattgacgttgtcattccagattgggcttatttgcgtgagaataag
gaccgaattgttgcggtcttcttaacccatgggcatgccgatgcaattggggcactccct
tactttttgagtgagttcaacgtccccgtattcggttcagaaatgacgattgctttagcg
aaaattgacgttgctgccgaacctaaggtgaaggattacgatgacttccacgtgatcgat
gaaaagacggaaatcgacttcggtgacgtggtggtttccttcttctctacgacccactca
attccagaatcactggggatcgacttaaaaactgatgaaggccaaattatttataccgga
gacttcaagtttgaccaaacggctaagcccggctaccagaccgactatgcgcggttaggc
gccattggtcaggcgggtgtcttggcggtattgagtgattccgctaacgctgaaaatcca
gcgatgaatgcttcagagcaaaccattgcggaatccatcgaagaaacgttccactaccgt
gatggacgggtcgttgtcgcctgtgtggcctcgaatattttgcggattcaacaagtcttt
gacgccgcagcgaagaccggacgaaaggtttgcttgacgggacaggatctcgaagccatt
gtgaacacggccatgaagctgggaaagttgtcctttgacgacgatcttttggttaccaca
gcgcaattagaccaattgtcaccagccgaaatcgtcattttacagacgggtaagatgggt
gaacccatcaaggcaattcagcggatggctaacaagcaagaaaaagacttaaacattcag
gagggtgacctggtctacatcaccacgacgccttcacatgccatggacaccacggttgcc
cagacgcgggacatgatctaccgggccggtggggaagttaaggccatttctgatgaactg
aattcatcaggccacgcctacaagcgtgaccttcagttaatgctgaacctgctgaaaccc
aagtatttagtacctattcaaggggaataccggctattaaatgcccatgcgaatgcggcc
atggaattaggcatggccgctgaccacatctttatcttggccaagggggatgttttgacc
tatgccaatggtgagatgggactcggcgaaggtatcgacgttagcgacaccatgatcgac
ggtatcggtgtcggtgatattgggaacatcgtgttgcgcgatcggaaggttttggccgac
gacgggatctttattgccgtggtgacgatcgaccggaagaagaaacagattgtagcggac
cctaagatcacatcacgaggctttgtctacgttaaggccaacaaggacttgatgcaggag
agtgctcagattattcgcaaggccgtccaaaacaacctggacaataaggaatttgattgg
ggtcacttgaagcaggatgtgcgtgaacatttgagccattacctgtttgaacaaacccac
agacgtccagttatcctgccagtcatcatggaggttaaccagcatcatcgtcggacgacg
ggtaaggaaaagacgccggctaaccaagcgacaccagctaaggccaaggcccctaaggca
ccaaagtcgaaggataagccagcgccaaagaaagatgtagcggataagtcggcccataag
gcccatcgtaaccggaaacggcggcggacgcctaaaccagcgaccactgaaacggataaa
gcataa
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