Lepidochelys kempii (Atlantic ridley): 140895545
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Entry
140895545 CDS
T11378
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140895545 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lkp03041
]
140895545 (PRPF40A)
Spliceosome [BR:
lkp03041
]
Complex A
U1 snRNP components
U1 related factors
140895545 (PRPF40A)
Complex B
140895545 (PRPF40A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140895545
NCBI-ProteinID:
XP_073161589
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Position
11:complement(28536920..28582762)
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AA seq
1061 aa
AA seq
DB search
MSGGDSAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVASATDQSPKSSRLGGRPDWPGG
KPVSLLAPLLPPRGEPEPLMPFGPSSRQQLRGRLLGRCGGGSLLNPSMRPGGVDRGSLMM
GHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSMMPGMMMS
HMSQAHMQPTVPPGVNSMDTQVGTTPPGTQITHQIVCAAQQTTTTNSSINEDPSKQKSMW
TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKE
SRWAKPKELEDLEGNAMIKAEENSSKPEESTPTSSAPAIATEITDTTGAAAAATTTAAAA
TTTSDVETAVAAPAATAIPAVAAAPEAESSTVAAVVENESTVTTTAEEQVQQTTTAAAAT
TIATPVVQEQNVEAVTNTAEETSKQEASVDVAPKKEEEDTQPVKKTYTWNTKEEAKQAFK
ELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYK
EAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKE
QAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICF
EEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTIS
SDIRFTNMLGQPGKTTSSSNNVESDTVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KEVTLLQDKGFLVEVNTTFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREK
EEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFI
HVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESRSVSDRS
SSAESERSYKKSKKHKKKNKKRRHKSDSPESDTEREKDKKEKERENEKDRPRQRSESKHK
SPPKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggggactcggcggctgccgcggcctcccctcagccgctccccttctccttg
ccgaagccccctcccctcatgcagctgacgccgggggacgccgtgcgccccgttgcctcc
gctacggaccaatcgccgaagagttcccggttgggaggccgcccggattggccgggtggg
aagcctgtcagcctcctggccccactgctcccgccccgcggggagcctgagcctctgatg
ccctttggcccctcgtcgcggcagcaacttagagggaggcttcttggcaggtgtggcggg
gggagcctcctgaacccctcgatgaggccgggcggagtggatagaggatccctcatgatg
gggcatccaggcatgccgcattatccacctatgggaatgcacccgatgggccagaggcca
ccgaacatgccaccggttccacatggaatgatgcctcagatgatgcctccaatgggagga
ccaccaatggggcagatgcctggaatgatgcagtcaatgatgcctggaatgatgatgtct
catatgtcccaagcacatatgcagcctactgtaccgccaggagtaaacagtatggacaca
caagtaggcactacaccacctggaacacagatcacacatcaaatagtttgcgcagcccag
caaaccaccacaaccaacagttctataaatgaagatccttctaaacagaaatctatgtgg
actgaacataaatcaccagatggaagaacttattattataatactgaaacaaaacaatct
acatgggagaagccagatgatctcaaaacacctgctgagcaattgttatctaaatgccct
tggaaagagtacaaatctgactctggaaagccttattactacaattcccaaacaaaagaa
tcacgttgggcaaaacccaaagagcttgaagatcttgaaggtaacgcgatgattaaagct
gaagaaaacagcagtaaaccagaagaatcaactccaacatcttctgctcccgctattgca
acagaaattacagataccacgggtgccgccgccgccgccaccaccaccgccgccgccgcc
accaccactagtgatgttgaaactgccgtggctgctcctgcagccactgccattcctgct
gtagcagctgctcctgaagctgaatcttctacagtagctgctgttgtagaaaatgaaagt
acagtaactacaacagctgaggaacaagtgcagcaaactactactgccgccgccgccaca
accatcgccactcctgttgtacaagagcagaatgtagaagctgtgactaacactgcagag
gaaacttctaaacaggaggcttcagtggatgttgctcccaaaaaagaggaagaggacacc
cagccagttaaaaaaacatatacatggaatacgaaagaagaagcaaagcaagcatttaaa
gaactgttgaaagaaaagcgtgtaccatccaatgcctcatgggagcaagctatgaaaatg
atcattaatgatcctagatacagtgcattggcaaagttgagtgaaaaaaagcaagccttt
aatgcttacaaagtccagacagagaaagaagaaaaagaagaagcaagatcaaaatacaaa
gaagctaaagaatcctttcaacgtttccttgaaaaccatgaaaagatgacatctacaaca
agatacaaaaaagctgaacaaatgtttggtgaaatggaggtctggaatgcaatatcagag
cgtgatcgtcttgaaatttatgaagatgtcttgttctttctgtctaaaaaagaaaaggag
caagccaagcagttacgaaagaggaattgggaggctttgaaaaacattttggacaacatg
gctaatgtaacatactctaccacttggtcggaggcccagcagtatctgatggacaatcct
acatttgcagaggatgaagaacttcagaatatggataaagaagatgcactgatttgtttt
gaagaacacatcagagctttggaaaaagaagaggaagaagaaaaacaaaagagtttgctt
agggaaaggcgacgacaacgtaaaaatagagaatcttttcagttatttttggatgaatta
catgaacatgggcagttacattcaatgtcctcctggatggagttgtatccaaccataagt
tctgacatcagatttactaacatgcttggtcagcctggtaagactacttcctcttccaac
aatgtagaaagtgatacagttttttcattaggatcaactgcacttgatcttttcaagttt
tatgttgaagatttgaaagcacgttaccatgatgaaaagaagataataaaagacatctta
aaggaggtaactctcttgcaggataaaggatttctggttgaagtgaatactacttttgaa
gactttgttacagtcatcagttcaactaaaagagcaaccactttagatgctggaaatatc
aaactggctttcaacagtttgctggaaaaggcagaagcccgtgaacgtgagcgggagaaa
gaagaggctcgcaaaatgaagcggaaagagtctgcattcaagagcatgttaaaacaagct
acacccccaattgaattggatgctgtctgggaggatatcagagatagatttgtgaaggaa
ccagcatttgaagacatcactctagaatctgaaagaaaaagaatctttaaagactttata
cacgtactagagcacgagtgtcaacatcatcattcaaagaataagaaacattctaaaaag
tctaaaaagcatcacagaaaacggtctcgctcccgttcgggctcagagtctgatgatgat
gatagccattcaaagaagaagaggcaacgctcagaatctagatcagtttctgatcgttct
tccagtgcagaatctgagagaagttacaagaagtcaaaaaaacataagaagaaaaacaaa
aagagaagacacaagtctgattcaccagaatctgatactgaacgagaaaaggataaaaaa
gaaaaagagagagagaatgaaaaggatagacctagacaaagatcggaatcaaagcataaa
tctcctcctaaaaaacggcctggaaaagattctggtaattgggatacatctggcagtgaa
ctgagcgaaggggaattagaaaaacagagaagaaccctcttggaacaactggatgaagat
caataa
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