Lepidochelys kempii (Atlantic ridley): 140895730
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Entry
140895730 CDS
T11378
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140895730 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lkp00536
]
140895730 (COL3A1)
Glycosaminoglycan binding proteins [BR:
lkp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140895730 (COL3A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
140895730
NCBI-ProteinID:
XP_073162233
LinkDB
All DBs
Position
11:51361181..51430249
Genome browser
AA seq
1464 aa
AA seq
DB search
MMSFVQKVTWLILAVFQPSITLAQQDVLGACTHLGQVYADRDVWKPEPCQICVCDSGAVL
CDDIICDDQELDCPNPEIPFGECCPVCPQLTPPPERPTSPPNGVVRGPKGDPGSPGTPGR
PGTPGSPGQPGSPGSPGQPGVCQSCPSINGGNFSPQYDSYDTKAGGGGPIYPHAIGGLGA
PGPPGLPGPAGQPGPPGTHGYQGSPGEPGQPGPSGPPGPPGLVGPAGSSGKDGEPGRPGR
PGERGLPGPAGHKGPPGMPGFNGMKGHRGFDGRDGAKGDSGAPGLKGENGLPGENGSPGP
MGPRGPAGERGRPGSPGSAGARGNDGTPGTSGQPGPPGPPGTAGFPGSPGSKGEAGAPGS
PGSDGTPGQRGEPGPQGHAGAAGSPGNPGRDGNPGGKGETGPAGIPGAPGLSGARGPPGP
AGTNGIPGQRGPSGEPGKNGAKGEPGLRGERGENGIPGAAGPPGEEGKKGANGEPGTNGL
PGTPGERGTPGSRGIPGSNGLPGEKGPAGERGGPGIAGPRGAPGEPGRDGGPGLPGMRGL
TGSPGSPGHDGKPGPPGNQGESGRPGPPGQSGPRGQPGVMGFPGPKGNEGAPGKNGERGA
PGPPGTQGLPGKSGDIGIQGPPGVAGPPGEKGEAGSPGPSGFQGLPGTAGPPGESGKPGE
PGQRGENGAPGLPGTKGENGLPGERGPQGAQGSPGTRGGTGPPGPEGGKGPAGAPGPPGG
TGPPGLQGMPGERGGNGSPGPKGEKGEPGGRGGDGFPGKDGPRGSAGPIGPPGPAGPHGD
KGEPGSAGPPGPTGARGGPGDRGEQGPPGPAGFPGAPGQNGEPGGKGERGPGGERGEPGP
AGAAGPQGGPGAPGPAGSQGAKGERGAPGSPGSSGFPGARGMPGPPGNNGNPGPPGNVGA
PGKDGGPGPAGSTGPAGSPGGAGPKGEPGQPGEKGSPGSRGEMGSPGSPGPSGIVGQRGI
VGPPGLAGRPGAPGMPGPKGEDGKPGSNGNPGERGAPGLQGPPGLSGSSGESGRDGNPGS
DGLPGRDGSPGPKGDRGENGGPGLPGASGHPGPPGNVGPAGKTGERGHPGPSGPVGPAGP
SGARGAPGAQGPRGDKGETGERGSNGIKGHRGFPGNPGSPGPPGPLGPQGANGSPGAMGA
RGPPGPAGPPGKDGTSGYPGPIGPPGPRGNRGESGSAGSPGHPGPAGPPGPPGAPGPCCG
GGDGIGGLTGEKGPSYYYGDQPSENKVNMNDILSSMKSINSQIENIVSPDGSRKNPARNC
RDLKFCHPELNSGEYWIDPNQGCKMDAIKAYCNMETGETCINANPSSVPRKNWWTSSGAE
KKHIWFGESMNGGFQFSYGDPELPEDVSDVQMAFLRLLSSRASQNITYHCKNSIAYMDQA
SGNVKKALKLMSSTESEFKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVV
DIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaacttggctcattcttgcagtgtttcaaccctcaatt
actttggcacaacaagatgttttaggggcatgtacacatcttgggcaagtgtatgctgac
agggatgtttggaaaccagaaccatgccaaatctgtgtgtgtgactcaggagctgttctc
tgtgatgacatcatctgtgatgatcaggaattagactgtcccaacccagagattccattt
ggagagtgttgccctgtttgtccacagctaacgccacctcctgaaagacctactagtcct
cccaatggtgttgtccgaggccccaagggagacccgggttctcctggaactcctggcaga
cctggaacacctggctcccctggacaaccaggcagtcccggctctcctggccagcctgga
gtctgtcagtcatgtccctctataaatggaggaaatttttctcctcagtatgactcctat
gataccaaggctggtggtggtggacccatatatccacatgctattggtggtttaggagcc
cccggcccacctggcctgcctggcccagctggtcaaccaggcccacccggtactcatgga
taccaaggttcccctggtgagcctggacaacctggcccttctggacctccaggaccccca
ggattagtaggcccagctggttcctcaggaaaagatggagaacctggaagaccaggcaga
cctggagagcgtggattacctggacctgcgggccacaaaggaccccctggtatgcctgga
ttcaatggaatgaaaggtcacagaggctttgatggaagagatggtgccaaaggcgacagt
ggtgctcctggtctgaagggtgaaaatggtcttcctggagaaaatggatcacctgggcca
atgggtccaagaggtccagctggtgaaagggggagaccaggatctcctggttctgctggt
gcccgtggtaatgatggtactccaggaacatctggacaacctggtccccctggccctcca
ggaactgcaggatttccaggctctccaggttctaagggtgaagctggtgctcctggttcc
ccaggctctgatggtacccctggacaaagaggagaacctggtccacaaggtcatgctggt
gcagctggttctcctggcaatcctggaagagatggaaacccaggtggtaaaggtgaaacg
ggccctgctggtattcctggtgctcctgggttgagtggagcccgtggccctcctggtccc
gcaggtaccaatggaattcccggacaaagaggcccgtcaggtgaacctggtaagaacggt
gcaaaaggagagccaggcttacgaggagagcgtggtgaaaatggtattccaggtgctgct
ggtcctcctggcgaagaaggcaaaaagggtgctaatggtgagccaggcacaaatggttta
cctggaacaccaggagaaaggggtaccccaggttcccgtggcatacctggtagtaatgga
cttcctggagaaaagggtcctgctggtgaacgtggtggtccaggcattgcaggtccaaga
ggagctccgggagaacctggacgcgatggtggccctggtcttccaggaatgagaggtttg
acaggaagtccaggaagcccaggacatgatggcaaacccggccctccaggtaatcaggga
gaatctggccgacctggtcctccaggccaatcaggtccacgaggtcaaccaggtgtgatg
ggtttcccaggtcctaagggtaatgagggtgcgccaggtaagaatggagaaagaggtgcc
cctggaccccctggcacacagggtcttcctggaaagagtggtgatatcggcatccaaggt
cctccaggagtcgctggtcctcctggtgaaaaaggagaggcgggatctccaggtccatct
ggcttccagggattacccggtactgcaggcccacctggagagagtggaaagcctggagaa
ccaggacaaagaggtgaaaatggagcccctggactcccaggtactaagggtgaaaatggt
ctcccaggtgaacgtggtccacaaggtgctcaaggttcccctggaacaagaggtggaaca
ggtcctcctggcccagaaggtggcaagggtcctgctggtgcacctggcccccccggtggt
acagggccacctggtttgcaaggaatgccgggagagagaggaggtaacggaagtcctgga
cccaaaggagagaagggagagcccggtggcagaggtggtgatggcttccctggtaaagat
ggaccaaggggatctgcaggtcccattgggcccccaggtccagctggcccacatggagat
aagggagaacctggttcagctggaccccctggtcctacaggtgcccgtggtggtcctggt
gatcgaggtgaacagggcccccctgggcctgctggcttccctggagcccccggacaaaat
ggggaacctggtggaaaaggagagagaggccctggtggtgaaagaggtgagcctggtccc
gcaggagctgcaggtcctcaaggaggccctggtgcaccaggtccagctggttcccaagga
gcaaaaggagagcgtggtgctccaggcagccctggttcatctggtttcccaggtgccaga
ggcatgcctggtcctcctggtaataatggcaatccagggccacctggtaatgttggagct
cctggaaaggatggtggtcctggtccggcaggtagcactggtccggctggtagccctgga
ggtgctggtcctaaaggtgagcctggccaaccaggtgaaaaaggttcaccaggttcaaga
ggagaaatgggttcaccaggtagtccaggcccctcaggtatagttggtcaacgtggtatt
gtgggaccgccaggccttgctggcagaccaggtgctcctggcatgcctggcccaaagggt
gaagatggtaaaccaggcagcaatggtaacccaggagaacgtggcgctccaggtctacaa
ggtcctcctggtctaagtggctcatctggagaatctggcagagatggtaaccctggatca
gatggcttgccaggtcgtgatggatccccaggacccaagggcgatcgtggtgaaaatggt
ggcccgggtttacctggtgcctctggtcatcctgggcccccagggaacgttggtccagct
ggaaaaacaggtgaaagaggacatccgggtccttctggtcccgttggccctgctggtcct
tctggtgctcgtggtgctccaggtgcccaaggtcctcgtggtgacaaaggtgaaactggt
gagcgtggcagcaatggcattaagggtcatagaggatttcctggtaacccaggttcccct
ggtccccctggtcctctgggtccacaaggtgcaaatggaagtccaggagctatgggagcg
agaggtccccctggcccagctggtcctcccggaaaggatggtacgagtggttaccccggt
cccataggtcctccaggccctcgtggtaatcgaggtgaaagtgggtctgcgggttcacct
ggccacccaggtcccgcgggtccccctggacctcctggggctcctggtccatgctgtggg
ggaggtgatggcattggtggtttaactggtgaaaaaggaccatcatactactacggagac
cagccatctgaaaacaaggtcaatatgaacgacatcttatcttcaatgaaatcaattaac
agccaaattgaaaacatcgttagccctgatggctcccggaagaacccagctcgtaactgc
agagacctgaaattctgccatcctgaactcaacagcggagagtactggattgatcctaac
caaggttgcaagatggatgcaataaaagcatactgtaatatggaaactggtgagacatgc
atcaatgctaatcccagcagtgtgccacgtaaaaactggtggaccagttcaggagctgaa
aagaaacacatctggtttggagagtctatgaatggtggcttccagttcagctatggagat
ccagagcttccagaagatgtttcagatgtgcagatggcattccttagattgctctctagc
cgcgcctctcagaatatcacttatcactgcaagaacagcattgcttacatggatcaggcc
agtggaaatgttaagaaagctctgaaactgatgagttccactgagagcgagttcaaggct
gaaggaaacagcaaattcacatacgccgttctggaagatggctgtactaagcacactgga
gaatggggtaaaacagtctttgaatacagaacacggaagacaatgaggttgcctgtggtg
gatattgctcccatggatattggtggtcctgatcaggaatttggtgtggacattggccca
gtctgtttcttataa
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integrated database retrieval system
