KEGG   Lepidochelys kempii (Atlantic ridley): 140897040
Entry
140897040         CDS       T11378                                 
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
lkp  Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lkp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140897040 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lkp03019]
    140897040 (CSTF1)
Messenger RNA biogenesis [BR:lkp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     140897040 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 PROPPIN VPS8_N Beta-prop_WDR11_1st Beta-prop_WDR75_2nd Frtz Beta-prop_HPS5 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 140897040
NCBI-ProteinID: XP_073165405
LinkDB
Position
13:complement(12880024..12895693)
AA seq 489 aa
MAARTGVRRMSGRRVPSACDRRPLPRGLSNVVSPAPEPRPLRLPFLEAEAPARHSLLTMY
RTKVSLKDRQQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDD
SAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQL
IATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFH
PTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLR
LYDINTFQCFVSCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEK
AHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFN
HTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRAR
FWYRRSTTD
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcagcgaggacaggtgtgaggaggatgtcaggccgtcgtgttccctcagcgtgtgat
agacgtccgcttccacggggcctgagtaacgtggtctcccccgctcctgagccacggccg
ctgcggctgcctttccttgaggctgaggcacccgcaaggcattccttgctcacaatgtat
agaacaaaagtaagcttgaaagatcgtcaacaactttacaaactgattattagtcaattg
ctgtatgatggatacataaacattgccaatggcctgataaatgagataaaaccacaatca
gtctgcgcaccatctgaacaactgctgcatctgattaaactaggtatggagaacgatgac
agcgcagttcagtatgcaattggacgctccgatacagtagcaccaggaacagggattgac
ttagaatttgatgcagatgtccagactatgtcccccgaggcttctgaatatgagacctgt
tacgtcacatctcataaaggaccatgtcgcgtagctacatatagcagagatgggcagtta
atagctacaggatctgctgatgcctcaataaaaattcttgatacagagagaatgttggca
aaaagtgctatgcccatcgaggtcatgatgaatgagacagctcagcagaacatggaaaat
catcctgttattcggacgctatatgatcatgtggatgaggttacatgtttagctttccat
ccaacagaacagatcctggcatctggttcaagggactatacacttaaattgtttgactat
tcaaaaccttctgccaaaagagccttcaagtatatccaggaagcagaaatgttacgctcc
atctcttttcatccttctggtgacttcatacttgttggtacccagcaccctaccttacgg
ctttatgatatcaatacattccagtgttttgtgtcttgcaatcctcaagatcaacacacc
gatgctatatgttcagtaaactataatgcaagtgctaacatgtatgtgacgggaagcaag
gatggatgcatcaaattatgggatggtgtttcaaatcgatgtatcactacttttgagaag
gcacatgatggggctgaagtctgttctgccatcttttctaaaaattcaaagtacatcctg
tcaagtggaaaagattctgtagctaaactatgggagatatccacaggtcgaacgctggtc
aaatatacaggagctggtttgagtggacgacaagtacacagaacacaggcagtctttaac
cacacagaggactatgtgttactgcctgatgaaaggaccataagtctctgctgctgggac
tcaagaactgcagaacggcgaaatcttctgtcattggggcataacagcattgtccggtgt
attgttcattctcctaccaatcctggtttcatgacatgcagtgatgactacagagctcga
ttttggtaccgaaggtcaaccacagactaa

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