Lepidochelys kempii (Atlantic ridley): 140897892
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Entry
140897892 CDS
T11378
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140897892 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lkp03041
]
140897892 (DHX16)
Enzymes [BR:
lkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140897892 (DHX16)
Spliceosome [BR:
lkp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140897892 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
Cas3-like_C_2
nSTAND3
ATPase
Motif
Other DBs
NCBI-GeneID:
140897892
NCBI-ProteinID:
XP_073167217
LinkDB
All DBs
Position
14:complement(41299776..41313809)
Genome browser
AA seq
1044 aa
AA seq
DB search
MAGLERWVSGELHALLGLSERHVVGFLLGLARRSRSPDELLNRLEETETLRVSEPAVRAF
AQRLWEQIPRSAPQERPARVAEREALAMQQKNRSYQLLEDSEEEEGDGGAAPGSKRRPEQ
RKHKKRRKHLRRKQEEASEEENEAEREPEPSLEGKDSEDEWDRSERERLQDLEERDAFAE
RVKRKDKEKTRNILERSDKKAYEEAQKRLKMAEEDKKTMIPELRKKSRWEYLAKRERDKL
EDLEAEIVDEEHLFSELELTAAERRELEYKRRVRDLAKDYKRAGEQEKLEKSSRYYMPEE
SRGKKIPDRYEEPVADERATPRDEQRRWEEEHIGAAALRFGARDASQRHPCKDYEFVLEE
DEMIHFVSAVHMQGTAQGKEEKSELSEAARRKLSMQEVRRSLPVYPYRQDLLAAIAEHQI
LIIEGETGSGKTTQIPQYLYEEGYTEKGMKIGCTQPRRVAAMSVAARVSQEMGVKLGNEV
GYSIRFEDCTSERTLLKYMTDGMLLREFLTEPDLSSYSVIIIDEAHERTLHTDILFGLIK
DIARFRPALKVLIASATLDTERFSTFFDDAPIFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQAPGDILVFLTGQEEIEACCEMLQERCRRLGSKISELLVLPIYANLPSDMQA
KIFEPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSRA
SANQRAGRAGRVAAGKCFRLYTAWAYKNEMEETTVPEIQRTNLGNVVLLLKSLGINDLIH
FDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRKMAELPVDPMLSKMILASEQYKCS
EQILSIAAMLSVNNSIFYRPKDKVVHADNARMNFFLPGGDHLVLLNVYTQWVESAFSMQW
CYENFIQFRSMRRARDVREQLEGLMERIEVDLTSSEGDYVPIRKAITAGFFYHTARLTRT
GYKTVKHQQTVFVHPNSCLFEEQPRWLIYHELVFTTKEFMRQVIEIDSTWLLEVAPHYYK
AKELEDASAKKLPKKMGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggagcgctgggtgtcgggggagctgcacgcgctgctggggctgagcgag
cggcacgtggtcgggttcctgctcggcctggcccggcgcagccgcagccccgacgagctg
ctgaaccgcctggaggagaccgagaccctgcgcgtgagcgagccggccgtgcgcgccttc
gcccagcgcctgtgggaacagatcccacgttcggccccccaggagcgtccggcccgggtg
gccgagcgagaggccctggccatgcagcagaagaaccgctcgtaccagctgctggaggac
agcgaggaggaggagggggatgggggggctgccccgggctccaagcgccggcccgagcag
aggaagcacaagaagcgacgcaaacacctacgccggaagcaggaggaggcgtcggaggag
gagaacgaagcagagcgggagccggagccatccctggaggggaaggactcagaggatgaa
tgggaccgcagtgagcgagagcgtctgcaggacctggaggagcgcgacgcctttgccgaa
cgggtcaagcgcaaggacaaggagaagaccaggaacatcctggagcgttcggacaagaag
gcctacgaagaggcgcagaagcgactgaagatggcggaagaggacaagaaaaccatgatc
ccagagctgcggaagaagtcgcgctgggagtacctggccaagcgggagcgggacaagctg
gaggacctggaggcggagattgtggatgaggagcacctgttctcggagctggagctgacg
gcggccgagcggcgagagctggagtacaaacgccgggtgcgcgacctggccaaggactac
aagcgggcgggcgagcaggagaagctggagaagagcagccgttactacatgcctgaggaa
agccgcggcaagaagatccccgaccgctacgaggagccggtggcagatgagcgcgccaca
ccgcgggacgagcagcggcgctgggaggaggagcacatcggggcggctgccctgcgcttc
ggggcccgtgacgccagccagcgccacccctgcaaggactacgagtttgtgctggaggag
gatgagatgatccacttcgtcagcgctgtgcacatgcagggcacggcccagggcaaggag
gagaagtcggagctgtcggaggcggcgcggcggaagctgtccatgcaggaggtgcggcgc
agcctgcccgtctacccctaccgccaggacctgctggcggccatcgccgagcaccagatc
ctcatcatcgagggggagacgggctccggaaagaccacacagatcccccagtacctgtac
gaggagggttatacggagaaggggatgaagattggctgcactcaacccagacgagtggca
gccatgagcgtcgcggccagagtgtcccaggaaatgggagttaagcttggtaacgaggtg
ggctacagcatccgctttgaggactgcacgtcggagcgcacgctgctcaagtacatgacg
gatggcatgctgctgcgggagttcctgaccgagcccgacctctccagctacagcgtgatc
atcatagacgaggcccacgagcgcaccctccacaccgacatcctgttcggcctgatcaag
gacatcgcacggttccgcccggcgctcaaggtgctgatcgccagcgccaccctggacacc
gagcgcttctccaccttcttcgacgacgcgcccatcttccgcatccccgggcgccgtttc
cccgtggacatcttctacaccaaggcccccgaggctgattacctggaggcctgcgtggtg
tcggtgctgcagatccatgtcacccaggcccccggtgacatcctggtcttcctcactggc
caggaggagattgaggcctgctgcgagatgctgcaggaacgctgccgccgtctggggtcc
aagatctccgagctgctggtgctgcccatctacgccaacctgccctccgacatgcaggcc
aagatcttcgagcccaccccgcccggggcccggaaggtcgtcgtggcaactaacatcgca
gagacctcgctgactattgacgggatcatctacgtcatcgacccagggttctgcaaacag
aagagctacaatgcccgcaccggcatggagtccctgatcgtcacgccctgctcccgggcc
tccgccaaccagcgagctgggcgggccgggcgcgtggctgccgggaaatgcttccgcctc
tacactgcctgggcctacaagaacgagatggaggagaccacggtgcctgagatccagagg
accaacctgggcaacgtggtgctgctgcttaagagtctgggcatcaatgacctcatccac
tttgacttcatggacccaccaccccatgagaccctggtgctggctctggagcagctgtat
gccctgggcgcgctcaaccacctcggggagctcaccaagctgggccggaagatggcagag
ctgcctgtggaccccatgctgtccaagatgatcctggcctcggagcagtacaagtgctca
gagcagatcctctccatcgcggccatgctgtctgtcaacaactccatcttctaccggccc
aaggacaaggtggtgcatgctgacaacgcccgcatgaacttcttcctgcccggcggggac
cacctggtgttgcttaacgtctacacccagtgggtggagagcgctttctccatgcagtgg
tgctacgagaacttcatccagttccgctccatgaggcgggcgcgggacgtgcgggagcag
ctggaggggctgatggagcgcatcgaggtggacctcacctccagcgagggagactatgtt
cccatccgcaaggccatcaccgctggcttcttctaccacacggcccgcctgacccgcacc
ggctacaagacggtcaagcaccagcagactgtctttgtccaccccaacagctgcctcttc
gaggagcagccccgctggctcatctaccacgaactggtcttcaccaccaaagagttcatg
agacaggtcatagagattgacagcacatggctgctggaggtggcccctcattactataag
gcgaaggagttggaggatgcctctgctaagaagctgcccaagaaaatgggcaagacacgg
gaggagctgggctag
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