Lepidochelys kempii (Atlantic ridley): 140899569
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Entry
140899569 CDS
T11378
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140899569 (SMG8)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140899569 (SMG8)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140899569
NCBI-ProteinID:
XP_073171413
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Position
17:5115349..5124582
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AA seq
966 aa
AA seq
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MTVPVSLRELLLAGGGGGASAPVPAPAEEEAAVCVVGIFGKTALQLSSEKAALVSTVCDR
QVFPLFQREGAGPGGAEPGAEPGAGGEEAAAAQDYNLLQAYYSQESKVLYLVLTSICDTP
QLLQACRDLSAGDARVPGLGHPPGAPLPHAEAHEFWKHQEKLHCLSLLYLFSVCHILLMV
HPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQLNG
ALKVDPPPGRGQDLCGQLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFT
VPANQAFVYIVAGGAQDGEDPVAMLLEQLRGNCTMKETDSLLAPTLAGPRRYQMMRHGRQ
QLSFHVESSSSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQ
KWVAAAQKLYEVAIEGKDDDPASPTGELTSKIMGSIKVLEAYLDIDTKFSENRCQKALPM
AHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLC
EERSLTDQHCVHKFHLLPKSGEKPEPDRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDI
KAANYDFYQLLEEKCCGKLDHINFPIFQPSTPDPAPAKNETSPAPPEGEAEKLKEKEPQT
QGESTSLSLALSLGQSTDSLGTYPADPQGGGDNAETHGQASESKSEKRPSLVDRQASTVE
YLPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVIRTR
AEDEGDLDTNSWPAPNKAVPGKRSAVVMGRGRRRDDIARAFVGFEYEDARGRRFMCSGPE
KVMKVMGSGPKESAIKALNSDMPLYILSSTQGRGLKPYYAQFIRLFVVVPDAPLQIILTP
QVQPGPPPCPTFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENQQLMSYKVVRGI
LKAITQ
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgccggtgagcctgcgggagctgctgctggctgggggcggcggcggcgcgagc
gccccggtccccgcccccgcggaggaggaggcggcggtgtgcgtggtgggcatcttcggc
aagacggccctgcagctgagctccgagaaggcggcgctggtgagcaccgtgtgcgaccgg
caggtcttcccccttttccagcgggagggcgcggggccgggcggggccgagcccggggcc
gagcccggggccggcggggaggaggccgccgccgcccaggactacaacctgctgcaggcc
tattacagccaggagagcaaggtgctgtacctggtgctcacctccatctgcgacaccccc
cagctgctgcaggcctgcagggacctcagcgccggggacgccagggtgccggggctcggc
cacccgcctggcgccccgctgccccacgccgaggcccatgagttctggaagcaccaggag
aaactgcactgcctgagcctcctctacctcttctccgtctgccacatcctgctgatggtg
caccccacctgctccttcgacatcacctatgaccgggtcttcagggccctggatgggctg
aggcagaaggtgctgccctccctcaaggctgccatcaaggactgcccggttggcaaggag
tggaagctcaactgcagaccgtgcccaccccgcctcctcttcctcttccagcttaatggg
gccctgaaggtggaccccccaccgggcagggggcaagatctctgtggccagctggagaag
cccccacccaagaagcattcacccaagaggcggttgcagcatgccctagaggaccagatc
taccgcatcttccgtaagagtcgggtgctgaccaaccagagcatcaactgccttttcact
gtgcctgctaaccaggcctttgtctacattgtagctggtggggcccaggatggagaggac
ccagtggccatgctgctggagcagcttaggggcaactgcacaatgaaggagactgattcc
ttgctggcacccaccttggcggggcccaggagatatcagatgatgagacatggcaggcag
cagctgtccttccatgttgagagtagcagtagcagctccagctcctctgggcagttggtg
gactgcaccctcaaggagttcctgtggcagcatgtggagctggtgctaagtaagaaaggc
ttcgatgatagtgtggggagaaaccctcagccctctcactttgagcttcccacatatcag
aagtgggttgctgcagctcagaaattgtatgaagttgccattgaggggaaagatgatgac
ccagcttcccccactggggaactgacctccaaaatcatgggaagcatcaaagtcttggag
gcgtacctagatatagacaccaagttttctgaaaaccgttgccaaaaggctctccccatg
gcccacagtgcctaccagtccaacctgccccacaactacactatgacagttcataagaat
cagctagcccaagccttgcgtgtgtacagccagcatgcccggggaccagcctttcacaag
tatgccatgcaacttcatgaagactgttacaagttctggagcaacgggcatcagctgtgt
gaggagcgaagtttaactgatcagcactgtgtgcataaatttcacttactccccaaatca
ggggaaaaaccagagccagatagaaaccctccagtgttgtatcacaacagccgggctcgc
tccactggtgcctgtaactgtgggaggaaacaagcaccccgggatgatccctttgatatc
aaagctgccaattatgacttctatcagctgctggaagagaaatgttgtgggaaactggat
cacatcaacttcccaatatttcagccgagtacacctgatccagcaccagccaagaatgag
acctcacctgcccctccagaaggagaagctgagaaacttaaagaaaaagagcctcaaacc
cagggagaaagcaccagcctgagcttagcccttagtttgggtcagtcgacggatagcctg
ggcacctacccagctgatcctcaaggtggaggagacaatgcagagactcatgggcaagca
tcagagtctaaaagcgagaagaggccaagcttggtagatcggcaggcatccacggttgag
tatcttcctggcatgctccattctaattgccctaaggggcttcttcccaaattctctagc
tggtcactggtcaaacttggtcctgctaaggcttataactttcacacaggcttagaccaa
cagggcttcataccaggaacaaactacttaatgccttgggacattgtcatcaggacaaga
gctgaagatgagggagatctggacactaattcctggcctgctcctaataaagctgttcct
ggcaaacgaagtgcagttgtaatgggaagaggaaggcggagagacgacatagctcgagcc
ttcgttggatttgaatatgaagacgcccgtggtcggaggttcatgtgttcagggccggag
aaagtcatgaaggtgatgggaagtgggccaaaagaatcggctataaaagcccttaattct
gatatgcccttatacatcctctcatcaactcaaggacgaggacttaaaccatattatgct
cagtttataagactctttgttgtggtgccagatgctccactgcagataatactgacacct
caggttcaaccaggacctccaccttgccctacattttatcctgagaaacaggaaataacc
ctcccacctgacggactgtgggtgctgcgattcccttacgcttatgtgacagaacgtgga
ccctgttttcctcctaaagaaaaccagcagttaatgagttataaggttgttcgaggaata
ctaaaagccattacacaataa
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