Lepidochelys kempii (Atlantic ridley): 140900938
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Entry
140900938 CDS
T11378
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140900938 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lkp03021
]
140900938 (SMARCA4)
03036 Chromosome and associated proteins [BR:
lkp03036
]
140900938 (SMARCA4)
Transcription machinery [BR:
lkp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140900938 (SMARCA4)
Chromosome and associated proteins [BR:
lkp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
140900938 (SMARCA4)
Chromatin remodeling factors
BAF complex
140900938 (SMARCA4)
PBAF complex
140900938 (SMARCA4)
GBAF(ncBAF) complex
140900938 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
140900938
NCBI-ProteinID:
XP_073175057
LinkDB
All DBs
Position
20:complement(24310554..24404035)
Genome browser
AA seq
1646 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSSGHAIPPQG
SGGYAQDNMHQMHKPMDSMHEKGISDDPRYGQMKGMGMRPGGHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPANGPSSGSQMSSGPGGVPLDGTDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSGTGPVQGAGPGPGP
GPTPPNYNRPHGIGGPNMPPPGPSGVPPGMPGQPPGAPPKPWPEGPMANAAAPTSTPQKL
IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVQLHQKQNRITPIQKPRGLD
PVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVV
CMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQH
AKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLI
DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD
GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLDTWLEMNPGYEVAPRSDSEESGS
EEEEEEEEEEQPQPAQPALPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQA
LARGLQSYYAVAHAVTERVDKQSTLMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL
GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA
FVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA
PRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL
IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE
KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFE
LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN
EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDENRYST
GSGSGSASFPHTASTLCLNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDR
RREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSL
TEKQWLKVYMAIEEGTLEEIEEEVRQKKSSRKRKRDVDVGSATPTTSTRSRDKDDDSKKQ
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
RQKIEKEEDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGRRRTSRGSR
AKPVVSDDDSEEEQEEDRSGSGTEDD
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagatcctccaatgggaggaactcctcgcccaggtccttctcctggaccc
ggcccatcacctggtgcaatgttgggccccagtcctggaccctcgcctggctctgcacat
agtatgatgggacccagccctggaccaccttcatcaggacacgctataccacctcagggg
tctgggggctatgctcaggacaacatgcatcagatgcacaagccaatggattccatgcat
gagaagggaatatctgatgatcctcggtacggccagatgaaggggatgggaatgaggcca
ggtgggcacacgggaatgggtcctcctccaagcccaatggatcagcattctcaaggttac
ccttctccgcttggcggttctgagcatgcctcaagcccagttccagctaacggtccgtcc
tctggctctcaaatgtcctctggtcctggaggagtcccgttagatggtactgacccacaa
gcattaggacaacaaaatcggggcccaaccccttttaaccagaaccagctgcatcagtta
agagctcagatcatggcctataagatgcttgccagagggcagccgttacctgaccatctt
cagatggcagtgcagggaaagagaccaatgcctggaatgcagcagcaaatgccgacgcta
cctccaccctctgtatctgggacaggaccagtgcaaggagcagggcctgggcctggacca
ggaccaacacctccaaattacaacagacctcatggtataggagggcctaacatgcctcct
cctggaccctcaggagttcccccaggaatgcctgggcagccccctggtgcacccccaaag
ccctggcctgaaggaccaatggcaaatgctgcagcccccactagcacacctcagaaactg
attcctcctcagccaactggccgtccttcaccagcacccccggcggtacctcctgcagca
tctcctgtaatgccaccccaaactcagtcacccgggcagccagcccagcctgcccccatg
gtgcagctccatcagaagcagaatcgtatcacaccgatccagaagccaagaggacttgac
ccagtggaaatccttcaggagagggaatacagattgcaggctcgcattgctcacagaatt
caagaactagaaaacctgcccgggtccttggctggtgacctgagaaccaaagctaccatt
gaacttaaagcactaagactgcttaacttccagagacagctgcgccaggaagtcgtggtg
tgcatgagacgagacacggccctggaaacggcgctgaatgccaaggcatacaaacgcagc
aagcggcagtccctgcgcgaggctcgcatcacagagaaactggagaaacaacagaagatc
gagcaagaacggaaacgcagacaaaagcaccaggaatacctcaatagcattctccagcat
gccaaggatttcaaagaataccatcgatctgtcacgggaaaaattcaaaagcttacgaaa
gcggtggctacttaccacgctaacactgagcgtgagcagaagaaagagaatgagaggatt
gagaaagagcgaatgcgcaggttgatggctgaggatgaagaagggtaccgtaagcttatt
gatcagaagaaagataagcgcttggcatatctactccagcagacagacgagtatgtggcc
aacctgaccgagctggtgcggcaacacaaggccgcacaggtggcaaaggagaaaaagaag
aaaaagaaaaagaagaaggcagagaatgcagaagggcaaactcctgcaattggaccagat
ggcgaacctctggatgagaccagccaaatgagtgatctccctgtgaaagtgatccatgtg
gaaagcggtaaaatccttaccggcacagacgctccaaaagctggacagctggacacttgg
ttggaaatgaacccaggatatgaagtagctcccagatctgacagtgaagaaagtgggtcg
gaggaggaggaagaggaggaggaagaggaacagccacaacctgctcagcctgccctgcct
gtggaggaaaagaagaagatcccagatccagacagtgacgatgtgtcagaagtcgatgcc
aggcacattattgaaaatgctaagcaagatgttgatgatgagtatggggtctcccaagct
ctggcgaggggattgcaatcttactacgctgtggcccacgcggtcactgaacgagtggac
aaacagtctacgctcatggtcaatggcgtcctcaaacaataccagattaaaggtttggag
tggctcgtctctttgtacaataataatctgaatggtatcctggcggatgagatgggtctg
ggcaaaactatccagaccatcgctttaatcacatacctcatggagcacaagcgtatcaat
ggacccttcctcattatcgtacctctctcaacattgtcaaactgggcatatgaatttgat
aaatgggctccttctgtggtgaaggtctcctacaagggctctccagcagcaagacgggca
tttgtacctcagcttcgaagtgggaagtttaatgtcttgcttacaacctacgagtacatc
atcaaagataagcacattcttgccaagattcgctggaagtacatgattgttgatgaaggt
cacagaatgaagaatcaccactgtaagctaacccaagtcctcaacacacactacgtagct
ccgcgtcgtttgctgctgacaggaactccactacagaataagctgccagagctgtgggct
ctactcaatttcctccttcccaccatcttcaagagctgtagcacatttgagcagtggttt
aatgctccatttgccatgactggagagaaggtggatttgaatgaagaagaaactattctg
attatccgtcgtttgcacaaagtgctgcgtcccttcctgctaaggcggttaaagaaggag
gtggaagcacagctgcctgaaaaggtggagtatgtgatcaagtgtgacatgtcagcatta
cagagggtgctgtatagacacatgcaggccaagggagtgctgctcactgatggctcggag
aaggataaaaagggcaaaggtggtacaaaaaccctgatgaacaccatcatgcagctgagg
aagatctgtaaccatccgtacatgtttcagcacatagaggaatccttttcagagcactta
ggtttcactggaggtattgtacagggactagacctgtaccgagcatctggcaaatttgag
ctcctagacaggattcttcccaaactacgagccaccaaccacaaggtgctgctgttctgt
cagatgacctcactcatgaccatcatggaagactactttgcataccgtggcttcaaatac
ctcaggctggatggaaccactaaagctgaagaccgtggcatgttgctgaagaccttcaat
gagccaggctcggaatatttcattttcctgctgagcactcgggccggagggctgggactg
aacttacagtctgcagatactgtgattatttttgacagtgactggaatccgcaccaggat
ttgcaggcacaggaccgagcgcaccgtatcgggcagcagaatgaggtgcgcgtgctccgc
ctctgcaccgtgaacagcgtggaggagaagatcctggctgcagccaagtacaagctgaac
gttgatcagaaggtcatccaggctggcatgtttgaccagaaatcctccagccatgagcgg
agagctttcctccaggctatcctagagcacgaggagcaggatgagaacagatacagcacg
ggcagcggcagtggcagtgcaagcttcccccacactgcctcaaccctgtgcctgaaccct
gacttggaggaaccacctctaaaggaagaagatgaagttcccgacgacgaaacagtcaac
cagatgattgcccgtcatgaggaggaatttgacctttttatgcgcatggacctggaccgc
aggcgggaggaggcacgtaacccaaagcgaaagccacgtctaatggaagaggatgagctg
ccatcctggattattaaggatgatgctgaagtggagaggctcacgtgtgaggaggaggag
gagaagatgtttgggcgagggtcacgtcaccgtaaggaggtggactacagtgactcgctt
accgagaagcagtggctcaaggtatacatggctatagaggagggcacgctggaggagatc
gaggaggaggttcgtcagaagaaatcttcccgcaaacgcaagcgagatgttgacgttggc
tctgccaccccgactaccagcacccggagccgagacaaagacgatgatagcaaaaagcag
aaaaagcgcggcaggcctcccgccgaaaagctctccccaaacccccccaacctcaccaaa
aaaatgaagaagatcgtggatgctgtgattaaatataaggacagtagtagtggacgccag
cttagcgaagtcttcatccagctgccttctcgcaaggagctcccggagtactatgagctc
atccgcaagccagtggatttcaaaaaaataaaggaacgcatccgcaaccacaagtaccgc
agcctgaatgacctggagaaggatgtcatgctgctgtgtcagaacgcacaaacctttaat
ctggaaggctctctgatctacgaagactcgatagtgctgcagtctgtcttcaccagcgtg
aggcagaaaattgagaaagaggaagacagtgaaggtgaggagagtgaggaggaggaggaa
ggagaagaggaaggatctgaatccgagtctcgctccgtcaaggtgaagatcaagctgggc
agaaaggagaaagcacaagaccggctaaagggtcgcaggcgcaccagccgcggctcccgg
gccaagccagtggttagtgacgacgatagtgaagaggagcaggaagaggatcgctcggga
agtggcaccgaagatgattaa
DBGET
integrated database retrieval system
