Lepidochelys kempii (Atlantic ridley): 140900971
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Entry
140900971 CDS
T11378
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140900971 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lkp03021
]
140900971 (SMARCD1)
03036 Chromosome and associated proteins [BR:
lkp03036
]
140900971 (SMARCD1)
Transcription machinery [BR:
lkp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140900971 (SMARCD1)
Chromosome and associated proteins [BR:
lkp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140900971 (SMARCD1)
PBAF complex
140900971 (SMARCD1)
GBAF(ncBAF) complex
140900971 (SMARCD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
DivIC
Motif
Other DBs
NCBI-GeneID:
140900971
NCBI-ProteinID:
XP_073175151
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All DBs
Position
20:412475..425484
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AA seq
554 aa
AA seq
DB search
MAARAGFQSVTPSGGTGGAGALGPGTPGPPVRMGPAPGQGLYRSPLPGAAYPRPGMLPGS
RMTPQGPSMGPPGYGGSPSVRPGMAQSGMDQSRKRPAPQQIQQVQQQAAQNRNHNAKKKK
MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFIS
NTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKD
LYGPDNHLVERLCSLTNVHGRGALLAHDGIYHIGGCAEGDFWELFWLYQSVSSLQQWHRT
ATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQ
YIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP
NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHETIETINQLKTQREFM
LSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQ
RRQELEQALGIRNT
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggcgggtttccagtcggtgactccgagcggcggcaccgggggggccgga
gcgctggggccgggcaccccggggccccccgtccgcatgggcccggctcccggccaaggc
ctctaccgctccccgctgccgggcgccgcctacccgcgccctggcatgttgccaggcagc
cgcatgacacctcagggaccctccatgggtcccccaggatatggtgggagtccctcagtc
cggcctggaatggcccagtctggtatggatcagtcccgcaagaggccagctcctcagcaa
atccagcaggtccagcagcaagcggcccagaatcgtaaccacaatgctaagaaaaagaaa
atggctgacaaaattctacctcagaggattcgtgaactggtaccagagtctcaggcctac
atggatctgttggcatttgaaaggaaactggaccagacaatcatgaggaaacgtctggat
atccaggaggccttgaaacgacccattaagcaaaagcgaaagctgcgcatttttatctcc
aacaccttcaatccagccaagtcggacgcggaagatggcgaagggactgttgcctcgtgg
gagctccgggtggaagggcggctgctcgaggacgctgctctgtccaaatacgatgccacc
aaacagaaaaggaaattctcatccttcttcaagtctctggtgatcgagctggacaaggac
ctgtatggcccagacaatcacctggtggagagactgtgcagtttgaccaatgtacatggc
agaggggcattgctggcacatgatggcatatatcacattggtggatgtgcagaaggtgac
ttctgggaactcttctggctctatcaatctgtttcttcacttcagcagtggcacagaact
gctactacccaggagacagatggcttccaggtgaagaggcctggggacgtgaatgtgcgc
tgtactgtcctcctgatgctggattatcagcctccacagttcaaactggacccccgcctg
gctcgtctcttggggattcatacccagacccgcccagtgatcatccaggcactgtggcag
tacatcaagacccacaagctacaagatccccatgagcgggagtatgtcatctgcgacaag
tatctccagcagatatttgagtctcagcggatgaagttctctgagattcctcaaaggctg
cacgctttgctcatgcccccagaaccaatcatcattaaccatgtgatcagtgttgaccca
aacgaccagaaaaaaaccgcctgctatgacatcgatgtggaagtggatgatactcttaaa
actcagatgaattctttcttgctgtccacagccagccagcaggaaatcgctgccctggat
aacaagatccatgagacaatagaaaccattaatcagctgaagacacaacgtgaattcatg
ctgagctttgcccgtgacccccaaggcttcatcaatgactggctccagtcacagtgccga
gatctaaagaccatgactgatgttgttgggaatccagaagaggagcgtagagctgaattc
tacttccagccctgggctcaggaagccgtgtgcagatacttctactccaaggtgcagcag
agacggcaggagctggagcaggcactgggaatccgcaacacataa
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