Lepidochelys kempii (Atlantic ridley): 140901083
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Entry
140901083 CDS
T11378
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140901083 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140901083 (XAB2)
03041 Spliceosome [BR:
lkp03041
]
140901083 (XAB2)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140901083 (XAB2)
Spliceosome [BR:
lkp03041
]
Complex B
Other components
Prp19-related factors
140901083 (XAB2)
Complex C
140901083 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
140901083
NCBI-ProteinID:
XP_073175379
LinkDB
All DBs
Position
20:complement(9017553..9037304)
Genome browser
AA seq
898 aa
AA seq
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MPELEETPVAAGGGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRSKEKILFVRGAAGAAERPLSCVRGAEGRLSWGSQRAPWILLYSWTVGR
GIWTLIPGPAWSCWAGAVCPSPRAPSCLSFPVPVSQAGSLSSGPIPPLWALELGGPGS
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgctggcggggggaagccggacctcttcttc
gaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttctctgtcaagtgc
tggatccgctacattgagttcaagcagaacgcccctcggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccctggctatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacacgcaggacctttgaccgggcactc
cgggcactgcccatcacgcagcaccatcgaatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacggctgtgcgagtctaccgcaggtacctgaagctgagccct
gagaacgctgaggagtacatcgaatatctgcgctccattgaccggctggatgaggctgcc
ctccgccttgccactgtggtcaatgacgagaggttcgtctccaaggaggggaaatccaac
taccagctgtggcatgagctttgtgacctcatctcccagaatcctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctcacccgcttcaccgaccagctgggcaag
ctctggtgctccctggccgactactacatccgcagcgggcactttgagaaggcccgggat
gtgtacgaggaggccatccagacggtgatgacagtgcgggatttcacccaagtgtttgac
agctacgcccagttcgaggagagcatgatcgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggagctgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagtgtattgctgcgccagaacccccataatgtc
cacgagtggcacaagcgtgtgaagctctatgaggggaagccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctcctttgccaagttctatgaagacaatgggcagatcgaggatgccaggaccatc
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctagcctgcgtttggtgc
gagtatggggagatggagctgcgccatgagaattatgaccaagccctgcgcatcctccgg
aaagccacggccatcccagccaggaaagcagaatactttgacgcctcagagcccgtccag
aaccgcgtgtacaagtccctcaaggtctggtccatgctggccgatctggaagagagcctg
ggcaccttcaagtccaccaaggcggtgtatgaccgcatcctggacctgcgcatcgccaca
ccccagatcatcatcaactacgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaatgtgtacgacatttgg
aacacctacctgaccaagttcatcgaccgctatggtggcaagaagctggagcgtgcccgc
gacctcttcgagcaggcactggacggctgcccccagaaatacgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtacgag
cgggccacgcgggccgtgcagccctcagagcagtatgagatgtacaacatctacatcaag
cgggcagccgagatctatggggtcacgcacacccgcagcatctatgagaaggccattgag
gtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgccgacatggagtgcaag
ctgggtgagatcgaccgggcccgggccatctactcctactgctcacagatctgtgacccc
cggaccacaggctccttctggcagacatggaaggactttgagatccggcacgggaacgaa
gacacgatccgggagatgctgcgcatcaaacgcagcgtccaagccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagcaatgccacaggcactgtgtca
gacctggcgccggggcagagtggcatggatgacatgaagctgctggagcagcgggcagag
cagctggcggctgaggcagagcgggacaagccccggtccaaggagaagatcctctttgtc
agaggtgcagctggagcagcagagcgtcccctcagctgtgttcggggggctgaaggccga
ctgagctggggcagccagcgggcaccatggatcctgctctactcctggactgtgggcaga
gggatctggactttgattcctgggccagcctggagctgctgggctggagccgtgtgcccc
tcacccagggcacccagctgccttagttttcctgtccctgtaagccaagcaggctccttg
agttctggccctatccctcccctgtgggctctggagctgggtggccctggctcctag
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