Lepidochelys kempii (Atlantic ridley): 140901924
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Entry
140901924 CDS
T11378
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03015
mRNA surveillance pathway
lkp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140901924 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
140901924 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lkp03021
]
140901924 (SYMPK)
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140901924 (SYMPK)
Transcription machinery [BR:
lkp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140901924 (SYMPK)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140901924 (SYMPK)
U7-dependent histone pre-mRNA processing factors
140901924 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
PDS5
Cnd1
Adaptin_N
INTS7_N
Motif
Other DBs
NCBI-GeneID:
140901924
NCBI-ProteinID:
XP_073177489
LinkDB
All DBs
Position
23:complement(5336566..5357610)
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AA seq
1293 aa
AA seq
DB search
MTSRAGEGSNARMSIASQFFTQEEGSGTDSMTTSERVVDLLNQAALISNDSKINLLKQVQ
ELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLK
DENVNVVKKAILAMTQLYKVALQWMVKSKVINDLQEACWEMVSAMASDIILLLDSDNDGI
RTHAIKFVEGLIITLSPRMPDSDVPKRHENDISLDRIPKDHPYIKHNVLWEEGKAALEQL
LKFMVHPAISSINLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRK
NLKLHLLSVLKHPSSFEFQAQITTLLVDLGTQQAEITRSMPSLKEPRKRPRDESDPALKK
MKMGLYGTEPPLGEDDEDKDLEQAAAPPPKPSAQTSTHSDTDITAEFLQPLLTPDNVANL
VLISMVYLPDTMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGSSPRPPGVE
HTKLLKEEPKEEKLVKPESVLIKRRLSSLSQGQAISVLGAQGCVTILLEQEAPQAKRRPE
PIIPATQTRLAGAGGRKKVFRLSDAIKPLTDVQMEKLKLGAVKRILCSERAVACSGAAQA
RVKILSSLVTQFDVPLKSEVLAFILDDIRNRLDLAFAWLYQEYNAYLSTFPAGSLDSYDE
CLIGLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIF
KRPSRQFQYLHVLLDLSSHEKDKVRQQAILFIKRMYEKDQLREYVEKFALNYLQLLVHPN
PPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVL
RVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKR
LPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGE
LLIALHNIDSTKCDMKSIIKATNLCFGERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQ
SLTMYPRLGGFVMNVLSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLNAV
FEKCPELREPLLAHVRSFTPHQQAHVPNSTMAILEASSKQEVEVKDSQPLEEEEQEPAPL
LPRMSQDMIALRLAQEKALKRQLEEEQKLKQPASQPRPAHALAPLPAEEPMDFREEGPEV
ETPTIFISMQEEEEGSGGDGSLLDSSVEGPLPAKEAKSKEAGASSAADEGAESKPESLTP
DEPAPGGPQPVSQPEELPEPGGGGTEQEQKPES
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgaccagccgcgcaggggagggcagcaacgcccgcatgagcatcgcctcccagttcttc
acccaggaggagggcagcggcaccgacagcatgaccacctcggagcgggtggtggatctg
ttaaaccaagctgccctgatcagcaacgactctaaaatcaacctcctcaaacaggtccag
gagctaattataaacaaggaccccacgctgctggataacttcctggatgagatcatcgcc
ttccaggcggacaaatccatcgaggtgcggaagtttgtcatcggcttcatagaagaggcc
tgcaaacgggatatcgagctgctcctgaagctcatcgccaacctgaacatgctgctgaag
gacgagaacgtcaacgtggtgaagaaggccatcctcgccatgacccagctctacaaggtg
gcgctgcagtggatggtgaagtccaaggtcatcaacgacctgcaggaggcctgctgggag
atggtgtcggccatggccagcgacatcatcctgctgctggactcggacaacgacggcatc
cgcacccacgccatcaagttcgtggaggggctgatcatcacgctgtcgccccgcatgccc
gactcagacgtgcccaagcgccatgagaacgacatcagcctcgaccgcatccccaaggac
cacccctatatcaaacacaatgtgttgtgggaggagggcaaggcggccctggagcagctg
ctgaagttcatggtgcacccggccatctccagcatcaacctcacagcggcgctgggctcc
ctggcctccattgcccgccagcggcccatgttcatggctgaagtgatccaggcctacgag
accctgcatgccaacctgccgccgacactggctaagtcccaggtgagcagcgtacgcaag
aacctgaagctgcacctgctgagcgtgctgaagcacccctcgtccttcgagttccaggcg
cagatcaccaccctgctggtggacctgggcacccagcaggccgagatcacccgcagcatg
cccagcctgaaggagccgcgcaagcgcccgcgggacgagagcgacccagccctgaagaag
atgaagatgggcctctacggcacagagccacccctcggggaggacgatgaggataaggat
ctggagcaagcagctgcgccaccacccaagccctctgcccagaccagcacccattcggac
acggacatcacggccgagttcctgcagcccctgctgacgccggacaatgtggccaatctg
gtgctcatcagcatggtgtacctgcctgacaccatgcccgcctccttccaagccacctac
acccccgtggagtcggctggcacagacgcccagatcaagcatctcgcccgcctgatggcc
acccagatgacggctgcagggcttgggccaggctcctctccccgtcctccaggcgtggaa
cacaccaagctgctgaaggaggagccgaaggaggagaagctggtgaagcctgagagcgtg
ctgatcaaacggcgcctgtcctcgctgtctcaagggcaggccatctccgtgctgggggcg
cagggctgcgtcaccatcctcctggagcaagaggccccccaggccaagcggcgcccagag
cccatcatcccggccacccagaccaggctggcgggcgccggtgggcgcaagaaggttttc
cgcctgagcgacgcgatcaagccactgacggacgtgcagatggagaagctgaagctggga
gccgtgaagcggatcctgtgctcggagagagccgtcgcttgcagcggggcggcccaggcc
cgtgtcaagatcctctcatccctggtgacccagtttgacgtgcccctgaagagcgaggtc
ttggccttcatcctggacgacatccgcaaccggctggacctggcctttgcctggctgtac
caggagtacaatgcctacttgagcacgttccccgccggctccctggacagctacgacgag
tgcctcattggcctgctctctggcctgcaggagaagccagaccagaaggatgggatcttc
accaaggtggtgctggaagccccactcatcacagagagcgccctggaggtgatccgcaag
tactgcgaggatgagagccgcacctacctggggatgtccaccctccgggacctgatcttc
aagcgtccgtccaggcagttccagtatctgcacgtgctgctggacctcagctcccatgag
aaggacaaggtccgccagcaggcgatcctcttcatcaagcgcatgtacgagaaggaccag
ctgcgggagtacgtggagaagtttgcactgaactacctacagctcctggtgcaccccaac
cccccatctgtgctcttcggcgccgacaaggacacggaggtggctgctccctggaccgag
gagaccgtcaagcagtgtctgtacctgtacctggccctgctgccgcagaaccacaagctg
atccatgagctggcgtcggtctacacagaggccatcgctgacatcaagcgcaccgtgctg
cgggtcatcgagcagccgatccgcgggatggggatgaactccccggagctgctgctgctg
gtggagaactgccccaaaggggctgagaccctggtgacccgctgcctgcacagcctgaca
gataaagtgcccccatctcccgagctggtgaagcgagttcgtgatctctaccacaagcgg
ctcccggacgtccggttcctcatccccgtcctcaacgggctggagaagaaagaggtgatc
caggctctgcccaagctcatcaagctgaaccccatcgtggtgaaggaggtgttcaaccgc
ctcttggggacgcagcacggcgaagggaattcggccgtgtcccccctgaaccctggggag
ctgctcatcgccttgcacaacatcgactccaccaagtgcgacatgaaatccatcatcaaa
gccaccaacctgtgtttcggcgagaggaacgtctacacgtcggaggtgctggccgtggtg
atgcagcagctgatggagcagagccccctgcccatgctgctcatgaggacggtcatccag
tcactgaccatgtacccacgcctgggtggcttcgtcatgaacgtcctgtcccgcctcatc
atgaagcaggtgtggaagtaccccaaagtgtgggagggcttcatcaaatgctgccagcgc
accaagccccagtccttccaggtcatcctgcagctccctccacagcagctcaacgccgtc
ttcgagaagtgccccgagctgcgggagccgctgctggcccatgtccgctccttcactccg
caccagcaagcgcatgtccccaactccaccatggccatcctggaagccagcagcaagcag
gaggtggaggtgaaggactcccagccgctggaggaggaggagcaggagcccgcgcctctc
ctcccacgcatgtcccaggacatgatcgctctgcggctggcccaggagaaggcactcaaa
cgccagctggaggaggaacagaaactgaagcagccagccagccagccgcgtcctgcccat
gccctggcaccactgcctgccgaggagccgatggacttccgggaggaggggcccgaggtg
gagacgcccaccattttcattagcatgcaggaggaagaggagggttcaggcggagatggg
tccctgttggactccagcgtggaggggcccctacctgcgaaggaagcgaagagcaaggag
gcgggagccagcagcgctgctgacgagggagcggagagcaagcccgagagcctcacgccc
gacgagccggcacccggcgggccccagccggtcagccagcctgaggagctgccagagccc
ggcggtggcggcacggagcaggagcagaaaccagagagctga
DBGET
integrated database retrieval system
