Lepidochelys kempii (Atlantic ridley): 140903381
Help
Entry
140903381 CDS
T11378
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lkp03016
]
140903381 (RTCB)
Enzymes [BR:
lkp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
140903381 (RTCB)
Transfer RNA biogenesis [BR:
lkp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
140903381 (RTCB)
Prokaryotic type
tRNA splicing ligases
140903381 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140903381
NCBI-ProteinID:
XP_073180738
LinkDB
All DBs
Position
1:complement(253531962..253548185)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgatgagctgcagtatctggacaagctcgacaagaacagctgg
aggatcaagaagggcttcgtgcccaacatgaatgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggcggtgctggt
ggattcttgcctgccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaacctggatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaggccatgtttgaccatattccagttggggtgggctccaagggtgtc
atccccatgaatgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataatgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtgatctatgatgtgtctcataatatcgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgaccagggct
ttccctcctcatcatcctctcattgctgtcgattaccaactgactggacagccagtactg
attggcggaacaatgggaacctgcagctatgttcttactggtaccgaacaaggcatgacc
gagacctttggaaccacgtgccatggagctggtcgtgcattgtcccgagccaaatctcga
cgaaatttggacttccaggatgtgttggacaagctggctgacatggggatcgccatccgt
gttgcttcccccaagctagtcatggaagaagcaccagaatcctataagaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
DBGET
integrated database retrieval system
