Lepidochelys kempii (Atlantic ridley): 140904538
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Entry
140904538 CDS
T11378
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03013
Nucleocytoplasmic transport
lkp03015
mRNA surveillance pathway
lkp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140904538 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
140904538 (DDX39B)
03015 mRNA surveillance pathway
140904538 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140904538 (DDX39B)
03041 Spliceosome [BR:
lkp03041
]
140904538 (DDX39B)
Enzymes [BR:
lkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140904538 (DDX39B)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140904538 (DDX39B)
Spliceosome [BR:
lkp03041
]
Complex C
Other components
EJC/TREX
140904538 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140904538 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140904538
NCBI-ProteinID:
XP_073183031
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAGGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggataacgagctgctggattatgaggatgacgaggtggagaac
caggcggggggcgacggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgggactttctgctgaaacccgagctcctccgcgccatc
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtctgtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagtgtcaaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccaggccggatcctggccctggcg
cgcaacaagagcctcaacctcaaacacatcaagcatttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccctgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagaccaagctgacgctgcac
ggcctgcagcagtattacgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ctgctggacgtgctggagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgccctggcccagctgctggtggagcagaacttcccggccatcgccatccaccggggc
atgccccaggaggagaggctgtcccgctaccagcagttcaaggatttccagcgccggatc
ctggtggccaccaacctctttgggcgggggatggacatcgagcgggtcaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgggctgggcgg
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaagatcctc
aacgacgtgcaggatcgcttcgaggtgaacatcagcgagctccccgacgagatcgacatc
tcctcctacatcgaacagactcgataa
DBGET
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