Lepidochelys kempii (Atlantic ridley): 140905430
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Entry
140905430 CDS
T11378
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03013
Nucleocytoplasmic transport
lkp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140905430 (UPF2)
03015 mRNA surveillance pathway
140905430 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140905430 (UPF2)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140905430 (UPF2)
mRNA cycle factors
P-body specific factors
140905430 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140905430
NCBI-ProteinID:
XP_073184864
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Position
1:337548947..337681858
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AA seq
1303 aa
AA seq
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MPAERKKSASMEEKESSLNNKEKDFSERRSVSSREKAKEDVKVGLKRETLKAPEDKKKKL
EEDKRKKEDKERKKKEEDKIKAEEEQKRKEDEEKKKFEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRET
HAHVSVVISFCRHCGDDIAGLVPRKVKNAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKDVAGTEDLELDMENLDINDDNLELDCGDEAE
DLTKKLLDEQVCSGRREGADSTGAENSDGKQAERKQEDEEASTGSHLKLIVDAFLQQLPN
CVNRDLIDKAAMDFCMSMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVA
EDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFSKNDTLHCLKMLLSDFSH
HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP
PPAEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDSEVKDYVICCMINIW
NVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE
LYNYRMVESAVIFRTLYSFTSFGVNPDGTASPLDPPEHLFRIRLVCTILDTCGQYFDRGS
SKRKLDCFLVYFQRYVWWKKNLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESV
RQVQDLEREFLIKLGIVNDKDSKDSMTEGENLEEEEEEEEGGAETEEQSGNESEVNEPEE
EECSDNDDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQAL
DKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESELGDTMPFVMLTRK
GNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQ
RPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRERGNRQRRS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagccagtatggaagaaaaagaatcttcattaaataac
aaagaaaaagacttcagtgaaaggcggtcagtgagcagtagagagaaagcaaaggaggat
gtgaaggttggcctaaagagagagactctgaaggcacctgaagataaaaagaaaaaactg
gaggaggataaacggaaaaaagaagacaaggagcgaaagaaaaaagaagaggacaagata
aaagctgaagaagagcagaagagaaaagaagatgaagaaaaaaagaaatttgaagaggaa
gagaaaaagaaacaagaagaggaagtaaaacgtcagcaagaggaggcagctgcacaattg
aaagagaaagaggaagcacatcaactgcatcaggaagcttgggagcgccatcaagcaaga
aaggaacttcgcagcaaaaaccagaatgcaccagacaaccgtcctgaggagaatttcttt
agcaggctggactcgagtctgaagaagaacactgcttttgttaagaagctaaaaactatc
acagaacaacagagggactccttgtctcatgattttaatagcctcaatttaagcaagtac
attgcagaagctgtagcttctattgttgaagcaaagctgaaaatatcagatgtgaactgt
gccgtgcacttgtgttctctctttcaccagcgctatgctgattttgctccatcactactt
caggtttggaaaaagcattttgaagcaaggaaagaagagaaaactcccaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgacaatagttgggattttcactgataaa
gaaggtctgtctttaatctatgaacagctaaaaaacattattaacgctgatcgagagact
cacgctcatgtttctgtggtaataagcttttgccggcattgtggagatgatattgctggt
ttggtaccaaggaaggttaaaaatgctgcagaaaagtttaacttgagttttcctcctagt
gagataatcagcccagagaagcaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagagagctgcaaaatattgagagacaaaac
aggcgtattctgcactctaaaggagagttgagtgaagatcgacataagcagtatgaagaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatctgttggat
gaaaatatgccggatcttccccaagagaaaccaacaccagaggaacatggacctggcatt
gacatttttacccctggcaaacctggagaatatgacctggaagggggcatctgggaagat
gaagatgctcgaaatttctatgagaaccttattgatctaaaagcttttgtgccagccatt
ttgtttaaagataatgaaaaatgttctcagaacaaggactccagcaaggatgagtctaga
gattcaaaagatgccaaggataataaggatgttgctggtactgaggatttggagttggat
atggaaaatttggacattaatgatgataacttggagttagactgtggagatgaagcagaa
gatctcacaaaaaagcttcttgatgagcaagtatgctcaggcaggagagagggagcagat
agcaccggagctgaaaatagtgacggaaaacaagctgaaagaaaacaagaggatgaagaa
gccagtactgggtctcacttaaaactgatagtagatgctttccttcagcaactcccaaac
tgtgtcaacagagacctcatagacaaggcagcaatggatttttgcatgagtatgaacaca
aaagccaatagaagaaagttagtacgagctctcttcatagttcctagacaaaggttggat
ttgcttccattttatgcaaggctggttggcacattgcatccctgtatgtctgatgtagca
gaggatctttgttccatgctgaaaggggatttcagatttcatgtgagaaaaaaggaccag
atcaatattgaaacaaaaaataaaactgtgagatttattggagagcttgccaagtttaag
atgttctccaaaaatgacaccctgcattgtttaaagatgcttctgtcagacttttctcat
caccatattgaaatggcatgtactctgctggaaacgtgtggaagattcctatttagatca
ccagagtctcacttaagaacaagtgttcttttggaacaaatgatgagaaagaaacaagca
atgcatctcgacgcacggtatgtcacaatggtggagaatgcatactactactgtaatccc
cctcctgctgaaaaaactgtgagaaagaaacgcccacctctgcaggagtatattcgtaag
cttctttacaaggatctctccaaggtcaccactgagaaggtcctgagacagatgcgcaaa
ttgccctggcaggactctgaagtgaaagattatgttatatgttgtatgatcaacatttgg
aatgtgaaatacaatagtattcactgtgtagctaacctcttagcagggttggtgctttac
caagaggacgttggaattcatgtcgtggatggagtgctagaggatattcgcctaggcatg
gaggttaaccagccaaagtttaatcagcgacggatcagcagtgccaagttcttgggagaa
ctttacaattaccgaatggtagagtcagctgtaatatttcgaactctatattcatttaca
tcatttggtgtgaaccctgatggtactgctagtccactggaccctccagaacatcttttc
cgaattagactggtctgcaccatccttgatacctgtgggcaatattttgacagaggttcc
agcaaacggaagcttgattgctttcttgtgtactttcagaggtatgtttggtggaagaag
aatttggaagtttggacaaaagaccatccgtttcctattgacattgactatatgatcagt
gataccctagaactgctgagaccaaagataaaactctgcaattctctggaagaatccgtc
aggcaggtacaagacttggaacgagaattcttaataaaactaggcattgtgaatgacaaa
gattcaaaagattctatgacggaaggagagaatctggaagaagaggaagaggaggaggaa
ggtggagcagagacagaagaacagtctggaaatgaaagtgaagtaaatgagccagaggaa
gaggagtgctcagacaatgacgatgaggagggtgaggaagaagaggaagagaatactgat
tacctcacagactccaataaggaaaatgaaactgatgaagagaacacagaagtaatgatt
aaaggaggaggacttaaacatgttccttgtgtagaggacgaggacttcattcaggcattg
gataaaatgatgctggagaatcttcagcaacggagtggagaatctgtgaaagttcatcag
ctggatgttgctattcctctgcatctcaagagtcagctaaagaagggtccacctttgggt
agtggggaaggagaatcagagttgggagacacaatgccatttgtcatgttaactcgaaaa
ggcaacaaacagcagtttaagatcctaaatgtgccaatgtcttctcaacttgctgccaac
cactggaatcaacaacaagctgagcaagaggagagaatgagaatgaaaaagctcactctg
gatattaatgaacggcaagaacaagaggactatcaggagatgttacagtctctggcacag
cgtccagctccagcaaatactaatcgtgaacggcggccacgttaccagcatccaaaggga
gcacctaatgcagatctaatctttaaaactggtgggaggcgagagagagggaacagacag
cgccgaagctga
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