KEGG   Lepidochelys kempii (Atlantic ridley): 140909232
Entry
140909232         CDS       T11378                                 
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lkp  Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lkp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    140909232 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lkp03021]
    140909232 (TAF5L)
   03036 Chromosome and associated proteins [BR:lkp03036]
    140909232 (TAF5L)
Transcription machinery [BR:lkp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     140909232 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     140909232 (TAF5L)
Chromosome and associated proteins [BR:lkp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     140909232 (TAF5L)
    STAGA complex
     140909232 (TAF5L)
    TFTC complex
     140909232 (TAF5L)
    SAGA complex
     140909232 (TAF5L)
    SLIK complex
     140909232 (TAF5L)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_Gbeta WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd TFIID_NTD2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SCAP ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st NBCH_WD40 Tricorn_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_EIPR1 PEP5_VPS11_N PROPPIN WD_LRWD1 Beta-prop_IP5PC_F Ge1_WD40 eIF2A Nbas_N Mala_s_1-like
Other DBs
NCBI-GeneID: 140909232
NCBI-ProteinID: XP_073194146
LinkDB
Position
3:130608008..130636155
AA seq 589 aa
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCMAEPQQYEVQFGRLRSFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTLTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRNESNGLETTDMPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDIVDEEEEDDDNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPWSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSIRVWDIR
NTYCNAPADGSSSELVGVYTGQMNSVLSVQFMACNLLLVTGIAQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgccgt
cagtacgtggactcggaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgtagtgtctgct
gctccctgcatggcagagccacagcaatatgaagtacagtttggacgattacgcagtttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctgtatccccttttc
gtctacctccatcttaacatggtccaaaatggcctaaagagcacagtggacagtttctat
agtcgcttccatgggatgttcttgcagaatgccagccagaaggatatcattgagcagttg
cagactactctgacaattcaagacatcctgtccaacttcaagctccgggcatttctggac
aacaagtatgttatccgccttcaagaagacagctacaactaccttctccgctacctccaa
agtgacaacaataatgctctttgcaaggttctcaccttgcacattcacctggatgtgcag
cctgccaagaggacggactaccagctatatgccagtggcagctcctcacgcaacgagagc
aatggcctggaaacgacagacatgcccgcttccatactgcagaatgaagcagcgctggat
ttacttcaggacagcattaaacgagtcaaggacgggcctccttcactaaccaccatatgt
ttctatgccttctataacacagagcagttgctgaacacagcagagatctcgccggatagc
aagctgcttgctgctgggtttgataattcttgtgtaaagctgtggagcttgcgatccagg
aagttaaaatctgagcctcatcttgtagacgtgtccagaatccgtctggcttgtgacatc
gtggatgaggaggaggaagatgatgacaatgtaggcacagaaatgaagatactgagagga
cattgtggaccggtgtatagcacgaggttcctatcagacagttcgggactcttatcttgt
tctgaggacatgtccatcagatactgggaccttggaagttttacaaacactgtgttgtac
caagggcatgcctaccctgtctgggatttggacataagtccttggagcctgtactttgcc
agtggttcccacgaccgcacagcaagactctggtcatttgatcggacatacccactgcga
atatatgcaggccacttagcagatgtggactgtgtcaagtttcaccccaattccaactac
ttggctacgggatccacagacaaaactgtgcgcttatggagtactcaacaggggaactct
gtgcgcctcttcacaggtcaccgtggccctgtgctggcacttgcattttctcccaatggt
aagtatctggcttcagcaggagaagaccagcggttaaagctgtgggacttggcatctggc
actctttacaaagaactgagggggcacacggacaatataaccagccttacttttagtccc
gacagcagtttgattgcctctgcatcaatggacaattctattcgggtttgggacattcgg
aacacatactgcaatgcccctgcagatggttcttccagtgaactggttggtgtatatact
ggacagatgaatagtgtactgagcgtacagtttatggcctgtaatcttcttctggtgact
ggaattgcacaagaaaatcaggaacattaa

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