Lepidochelys kempii (Atlantic ridley): 140911277
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Entry
140911277 CDS
T11378
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140911277 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140911277 (MTREX)
03041 Spliceosome [BR:
lkp03041
]
140911277 (MTREX)
03009 Ribosome biogenesis [BR:
lkp03009
]
140911277 (MTREX)
03016 Transfer RNA biogenesis [BR:
lkp03016
]
140911277 (MTREX)
Enzymes [BR:
lkp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140911277 (MTREX)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140911277 (MTREX)
Spliceosome [BR:
lkp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140911277 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
140911277 (MTREX)
Ribosome biogenesis [BR:
lkp03009
]
Eukaryotic type
Pre-60S particles
Helicases
140911277 (MTREX)
Transfer RNA biogenesis [BR:
lkp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140911277 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140911277
NCBI-ProteinID:
XP_073200038
LinkDB
All DBs
Position
5:35259419..35361812
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFEDDAAAASAAKKGKAAAAEAASKAGKRSDGKSPAGSTNIPGKKKREA
EVDSTDYAIFGKKSKIEDVSEDINLADLMPKVKVQAVETVEGCTHEVALPANEDFIALKP
RTGKASKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNK
LDEQYNKIEIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDD
DFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQ
VVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDSSLETVYKLCERKAQIAVDIRTAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatctgttcagcgtgttcgaggacgatgccgccgccgcc
tctgcggccaagaagggcaaagcggccgcggccgaggctgccagcaaggccgggaaacgc
tcagatggcaaatctccagcaggctctacgaacatcccaggaaaaaagaaaagagaggca
gaggttgatagcacggattatgccatttttggaaagaaatccaagatagaggatgtttca
gaagatattaatctggcagacctgatgccgaaagtaaaggtgcaagccgttgagactgtt
gaaggttgtacacatgaggttgcacttcctgcaaatgaagacttcatagccctcaagcca
agaactggaaaagcttcaaaggaatatccattcattcttgatgcttttcaaagagaagcc
attctttgtgtggataacaatcagtctgttttagtgtcagctcatacatcagctggcaaa
actgtgtgtgcagagtatgcgattgccttggctctgagggagaaacagcgtgtgatattt
actagtcctattaaagctctgagtaaccagaaatatcgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtcttgtaatg
acaacagagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcc
tgggttatatttgatgaaatccattatatgagagatgcagaacgtggtgtggtttgggag
gagaccattattttgctacctgacaacgttcactatgtgtttctttctgccactattccg
aatgcccgccagtttgctgaatggatttgccatcttcataaacagccttgccatgtgatt
tacacagattatcgacctactcctctgcaacattatattttcccagcagggggggatgga
ctccaccttgtggttgatgaaaatggcgatttcagagaagataactttaacacagcaatg
caagtacttagagatgcaggtgacttagcaaaaggagatcagaagggcaggaaaggagga
acaaaaggaccatcaaatgtatttaagatagtgaagatgatcatggaaaggaatttccag
cctgtaattatattcagtttcagtaagaaagactgtgaagcctatgcccttcagatgaca
aaattagacttcaacacagatgaagaaaaaaagatggttgaagaagtatttaataatgca
attgactgtctgtctgatgaagacaagaaacttcctcaggttgagcatgtgcttcctctt
ttgaagcgaggaattggcatccatcatggtggtttgcttcctattttaaaggaaaccatt
gaaattcttttttctgaaggattgataaaggccttatttgcaactgagacctttgctatg
ggaattaatatgccagccagaacagtgctgttcacaagtgcccgtaaatttgatgggaaa
gatttcagatggatctcctcaggtgaatatattcagatgtctggtcgtgcaggacgtcga
ggtatggatgacagaggaatagtaattcttatggtggatgagaagatgagcccaacaatt
ggcaaacagcttcttaagggctcagctgatcctctaaacagtgcttttcacttgacatac
aacatggtgttgaacttgctccgagtagaggaaattaaccctgaatacatgttagaaaaa
tccttctaccagtttcaacactacagagctattccaggagtagtagaaaaggtaaataaa
ttggatgaacagtacaacaaaatagaaattccaaatgaggaaagcgtggtcatctactac
aaaatccgacagcagcttgctaaactgggtaaagaaattgaggaatatgttcacaaacca
aaatactgcttgccatttttacagccaggcaggctggtaaaggtaaaaaatgaagatgat
gattttggttggggagtcgttgttaacttctccaagaaatcaaatgttaagcccaactct
ggtgaactggacccattatatgtggttgaagtcctattacactgcagcaaagagagtttg
aagaattctgctactgaggctgcaaagccagcaaagcctgatgagaaaggagagatgcag
gtagttcctgttttggttcatcttctctcagctatcagcagtgtccgactttacataccc
aaagacctgaggcccatcgacaataggcaaagtgtgttaaaatctatacaggaagtacag
aagcggttccctgatggagtaccattattggaccccattgatgacatgggcatcaaagac
caaggactgaaaaaagtcatccaaaaaatagaggcttttgaacataggatgtattcacat
ccacttcacaatgattccagtttggagactgtatataagctttgtgaaagaaaagcacag
attgcagtggatattagaacggcaaagcgagaactaaagaaagccagaactgtcttacaa
atggatgagctcaagtgccgcaaacgtgtattgagaagattgggttttgccacatcttct
gatgtcatagagatgaaaggacgagttgcctgtgaaatcagcagtgctgatgaactgctc
ctgacagaaatgatgtttaatggtctcttcaatgacttatctgcagaacaagcaactgca
ttactaagctgctttgtatttcaagagaattccagtgaaatgcccaaattgacagagcaa
ttggcaggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttcagca
gaagctaaattggaaatcgatgaggaaaattacctaaactccttcagacccaacctaatg
gatgtagtatacacatgggcaaatggagctacttttgctcacatctgcaaaatgaccgat
gtctttgaaggtagcataattcgttgtatgaggcggctagaagaattgcttcgacagatg
tgtcaagcagcaaaggccataggaaacacagagctggaaaataagtttgctgaaggaatt
accaaaatcaagagagacattgtgtttgctgcaagcctctacctataa
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