Lepidochelys kempii (Atlantic ridley): 140912451
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Entry
140912451 CDS
T11378
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140912451 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140912451 (PATL1)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140912451 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
140912451 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140912451
NCBI-ProteinID:
XP_073202965
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All DBs
Position
6:complement(15144555..15167246)
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AA seq
791 aa
AA seq
DB search
MCWYREMRQSPGMGSDRQTRRPSFGHESLEECPLDEDEDAFQTLGEEDEDIDQFNDDTFG
AGAIDDDWQEAHERLAELEDKPATARELEDGAVSDEMDLLGHHEENLAERLSKLVIENEL
EDPAIMQAVQTQPPMQQPGGLNSSIWDGSAVLRRIRGPLLTQEVPSVSVLEYALPQRPPQ
GQEDERDLSERALPRRSSSPVIGSPPVRAVPIGTPPKQATVPNFNQQILCPKPVHIRAPM
QQRYPSPYSERMSPNQLCNVPNSSLLGHPFPPSVTPVFTHLQRAQLLGGAQAGRMSPSQF
ARVSGLVGSPLTSMNPKLLQGRVGQMMSPASGFRAFFGAPPPPAPPPSQQQHPPCPGSHL
QNLRPHPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSAGDRVGHRNSHQEQLRKD
PYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFQKLEKVSAAEEMHGDGPKKERT
KLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKR
RQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMEERKQKICDMYDNLRGKMPGQERP
SDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMATARNLPFLIKKDAQDEVLLCLLRP
FSLVLYHLPSGTVTSLLQQLANLPQSATAPAPANLHLAAVLQNKFGLSLLYLVLSRGEEL
QNSSAATELMQDNQWTELMFMATRELLRIPEAALAKPVSTPSNLLSLFSRYVDQQKLNVL
ETKLQLVQGIR
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtgctggtatagggaaatgagacaatctccaggaatgggttcagacagacaaactcgg
cgccccagctttgggcatgagtccctggaggagtgtcctctggatgaagatgaagatgcc
tttcagaccctgggcgaggaggatgaagatatcgaccagttcaatgacgacacgtttgga
gctggtgctattgatgacgactggcaggaggcacatgagcggctcgcagaactggaagac
aagcctgcgacagctagagagctggaagatggggcggtcagtgatgagatggacctgctg
gggcaccatgaggagaacctggctgagaggctgagcaagctggtcatcgagaacgagctc
gaagatccagccatcatgcaggctgtgcaaacccagcctccaatgcagcagccaggaggc
ctcaactccagcatctgggatggatctgcagttctgaggcgcatccgaggaccgcttctc
actcaggaggtgccctcggtgtctgtgctggaatatgctctgcctcagagaccaccacag
ggccaggaggatgagcgggacctctcggagcgggcactgcccaggcgttcgtcctcccca
gtcattggaagcccccctgtcagggctgtccccatcggcaccccaccaaagcaggccacc
gtgcccaacttcaaccagcagatcctgtgtccgaagcctgttcacatccgggccccgatg
caacagcgttatccttccccctacagcgagaggatgtctccaaaccagctctgcaatgtc
ccgaattcctccctgctgggccacccgttccctcccagcgtcactcccgttttcacccac
cttcagagagcgcagcttctaggaggagcacaggctggacgaatgtctcccagccagttt
gctcgtgtctctggactcgttggcagccccctcacatccatgaaccccaagttgcttcaa
ggcagagttgggcagatgatgtctccagccagtgggttccgtgccttttttggagcgcca
ccgccccctgcgccacccccatcccagcagcagcaccccccatgtcctgggtcccacttg
cagaacctaaggcctcaccctcagatgttcagaccagatacaactcaccttcacccgcag
catcggcggctcttacatcagagacagcagcagaacaggaaccagcaccgtagtctgaat
ggctcggcaggggaccgagtgggccaccggaacagccatcaggagcagctgcggaaggac
ccctatgccaatctcatgttgcagcgggaaaaggactgggtatcaaagatccagatgatg
cagttgcaaagcactgacccttacctggatgacttctactatcagaattacttccagaag
ctggagaaagtgtcagcggcagaggagatgcacggcgatggccccaagaaagaacgtact
aaactcatcacaccccaggtggccaagttagagcatacctacaagccagtgcagtttgag
ggctcgctggggaagctcacagtctccagtgtaaataacccccggaaaatgattgacgcg
gtggtgacctcccgcagtgaggacgatgagacgaaggagaagcaggttcgagacaagaga
cgtcagacccttgtcaccattgagaagacatacagcctcctcctggatgtggaagactat
gagaggcgctacctcctgagcctggagggggagcggccagccctgatggaggagagaaag
cagaagatctgtgacatgtatgacaatctgagggggaaaatgcccggccaagagaggccg
agtgacgaccactttgtgcaaatcatgtgtatccggaaagggaagcgtatggttgcccgg
atcctgccctttctgtccacggagcaagcggccgacatactcatggcaacagccagaaac
ctgcccttcctgatcaagaaggatgctcaggatgaggtgctgctgtgcctgttgaggccg
ttctctctcgttctctatcatcttccgtcggggacggtcaccagccttctgcagcagcta
gcgaacctacctcagagcgccacggcgccagcacctgccaacctgcacctcgcagctgtg
ctccagaacaagtttggcctgtccctgctgtacttggtcctgagtcgtggggaggaattg
cagaattccagtgctgctacggagctaatgcaggacaaccagtggacggagctgatgttc
atggcaacccgagagcttctgcggatccctgaagcagcgctggcaaagccagtatccacc
ccctctaacctgctgtcccttttttctcgctatgttgatcagcagaagctgaacgtgctg
gagacaaagttgcagttagtgcaggggatacggtag
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