Lepidochelys kempii (Atlantic ridley): 140912736
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Entry
140912736 CDS
T11378
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140912736 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140912736 (CSTF3)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140912736 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
NRDE-2
TPR_6
TPR_16
Motif
Other DBs
NCBI-GeneID:
140912736
NCBI-ProteinID:
XP_073203808
LinkDB
All DBs
Position
6:41469640..41606301
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AA seq
801 aa
AA seq
DB search
MLDLTMSGVKDFGKNWRLTDGQIDSANFIRRGTAEHKFKTTVLLRVLLSVIGKAYLFWAS
LKEAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGR
FWKLYIEAENQHTNWITWQYCQNVALNCIMYAMNRQLQKIKAKNYDKVEKLFQRCLMKVL
HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV
GSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNA
RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV
MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL
KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM
IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH
LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEY
EGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLATIIPDPVVAPSIVPVLKDEVD
RKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQV
DELMEIFRRCKMPETVDEAVRIITGGLPELTVEGNGPVENNTMFNKAVKRPNEDSDDEEE
KGSVVPPVHDIYRARQQKRIR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgttggaccttaccatgtccggggtcaaggactttggaaagaattggaggctgacggat
ggacagattgacagtgcaaatttcatcagacgtgggacagctgaacataaattcaagact
acagtcctcctgagagttctcttgagcgttattggaaaggcttatctgttctgggcttcc
ctaaaagaggctgctgaatatgttccagaaaaagtgaagaaggctgaaaagaaattagaa
gagaatccatatgaccttgacgcttggagcattctcattcgagaggcacagaatcaacct
atagacaaagcacggaagacctatgaacgccttgttgcccagttccccagttctggcaga
ttctggaaactgtacattgaagcagagaatcaacatacaaattggattacttggcaatac
tgccaaaatgttgctttaaactgcatcatgtatgctatgaacagacagcttcaaaaaatt
aaagcaaaaaattacgacaaagtagaaaagttgtttcaaagatgccttatgaaagtgcta
cacatagatttatggaagtgttacctttcgtatgtacgtgaaaccaagggaaagctaccc
agttacaaagaaaaaatggctcaggcatatgactttgctctggataaaatcggcatggaa
atcatgtcataccagatctgggtggattacatcaattttttgaaaggcgtagaggcagtt
ggatcttatgcagaaaaccagaggataactgctgttcgtagggtttaccagcgaggttgt
gtgaacccaatgatcaacattgaacaactctggagagattataacaaatatgaagaggga
atcaatattcacctagctaaaaaaatgattgaagatcggagtagagattatatgaatgct
agacgtgtggccaaggaatatgagactgttatgaaaggtctggatcgcaatgctccctcc
gtccccccacagaatactccccaagaggctcagcaggttgacatgtggaagaaatatatc
cagtgggaaaagagtaatccactgcgcacagaagaccaaactctcataacaaaaagagtt
atgtttgcttatgagcagtgcctgttggtcctcgggcatcatccagatatctggtacgag
gctgcacagtatcttgagcaatccagtaagctgctagctgagaaaggggacatgaacaat
gctaaactgttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttacta
aagaagaacatgcttctgtactttgcatatgcagactatgaagagagtcgaatgaagtat
gagaaggtgcacagcatatataaccggctcttggctattgaagatattgatcctactttg
gtatatatacagtatatgaaatttgcaaggcgggcagaaggcatcaaatctggaagaatg
atatttaagaaagcgagagaggatgcccggactcgccatcatgtctatgttacggcagct
ttgatggagtattactgtagtaaggacaagtcagtggccttcaagatttttgagttggga
ctgaagaaatatggagacattccagaatatgtactggcatacattgactatttgtctcac
cttaatgaggacaataatacaagagttttgtttgaacgtgttttaacatcaggaagcctc
ccacctgagaaatctggagaaatctgggcccggtttttagcttttgaaagtaacattggt
gatctagctagtatacttaaagtggaaaaacggaggtttacagccttcaaagaagaatac
gagggtaaagaaacagctctgctggtagataggtacaagttcatggatttgtacccttgc
tctgcaagtgaacttaaagctcttggttacaaggatgtctcacgtgccaagttagcaacc
ataattccagaccctgtggtggctccttctattgtgcctgttctaaaagatgaagtggac
agaaaacctgaatacccaaaaccagacacacagcagatgattccatttcagccaagacat
ttagcacctccaggtttgcatcctgtgccaggtggtgtatttccagtcccaccagctgct
gtagttttaatgaaactcctcccaccacctgtgtgttttcagggcccttttgtgcaagtg
gatgaactcatggagatttttcgaagatgcaaaatgccagaaactgttgatgaagctgta
agaataattactggaggcctgcctgaattaactgtggaaggcaatggacctgtggaaaat
aataccatgttcaataaagctgtcaagagaccaaatgaagattctgatgatgaagaggag
aagggatctgtggttcctcctgtacatgacatatacagagcacgacagcaaaagcgaatc
cgatga
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