Lepidochelys kempii (Atlantic ridley): 140913061
Help
Entry
140913061 CDS
T11378
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp04140
Autophagy - animal
lkp04148
Efferocytosis
lkp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
140913061 (VPS18)
04148 Efferocytosis
140913061 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
140913061 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lkp04131
]
140913061 (VPS18)
Membrane trafficking [BR:
lkp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
140913061 (VPS18)
Hops complex
140913061 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-RING_Vps41
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf-RING_UBOX
STX17_N
KNOX2
zf-ANAPC11
zf-RING_2
DUF5600
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
140913061
NCBI-ProteinID:
XP_073204844
LinkDB
All DBs
Position
6:complement(73027241..73042984)
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLSRSASLQQSRASVGIPHSGYVNARLEKETPIFNKQRIDFTPPEKINSL
VVSCNQLCMSLGRDTLFRIDLGKADEPNQVELGRKDEARVYKMFLDHTGSHLVIALNTSE
CLYLNRSAQKVRTLSRWKGHLIESVGWNKFLGSETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNLDQYFRLVYTLEEEAGPTPVCCLEIERGLDGKCFIIATTRKRLFQFVGKVPEGAE
QQGFGFVFGMHADHLPSFREFPASFGYSEIAFYTPKLRSSPRSFAWMMGNGVLYGTLDYG
RPDSILSDERVWEYPSDVDVAANKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFL
EKFGSLKCMIKDPTVGQIWIYTEKVVFRYHVQRESRDVWKMYMNINKFDLAKEYCKDRPE
CLDIVLAREAEHSFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLLKKLASL
KSSEKTQTTLLTTWLTELYLNRLGALEGNTSKRNLFEATREKFCSFLSSPRNKECLFNNR
ASIYELLASHGDTEHMVYFSVIMQDYERVVAHHCQHDDYDEALNILTRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGTKLDARKLIPALVNYSQSGSTQQISEAIRYMEFCVCELEETE
QAIHNYLLSLYALCRPDSLLSYLKQAGANPNRIHYDLKYALRLCAEHGHHRACVHVYKVM
ELYEEAVDLALQVDVDLAKSCADLPEEDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
NLLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNRHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQAVFPNLPAYKQAKLEDLQK
KLGATSQPSKAHHRPKDTDATSMGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEERQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatcctggacgagtacgaagattcgctgtcccgctccgcctccctgcagcag
agccgcgccagcgtgggcatcccgcactccgggtatgtgaatgctcggctggagaaggaa
actccaatatttaacaagcaaaggattgatttcactcctccagagaaaattaacagcctt
gtggtctcctgtaaccaactctgtatgagccttggcagagacacccttttcaggattgat
cttggcaaggcagatgaacctaatcaggtagagttgggacgcaaggatgaagccagagtc
tacaagatgtttttggaccacacaggatctcatcttgtgattgcactgaacactagtgaa
tgcctgtatttgaacagaagtgctcagaaggtgcggacgctctcccgctggaaaggtcac
ttgattgaaagtgtgggctggaacaagtttctgggttcagagactaacactggtcctatc
ctggtggggacagcccagggccaaatatatgaggctgagatctctgtcagcgagggaagt
ctcttcagcactaatctggaccagtatttccgactggtgtataccttagaggaggaggca
ggaccgactccagtctgctgtctggaaatagagcgagggctcgatgggaaatgttttatc
attgccactactcgtaagagactcttccagtttgttggcaaagtgcctgagggggcggag
caacagggctttggcttcgtgtttggcatgcatgcagaccacttgcccagcttccgagag
ttcccagccagctttggctacagcgaaatagcattttacactccaaagctacgctcctcc
ccacgctcctttgcctggatgatgggaaatggggtcttgtatggtacattggactatgga
cggcctgactctattctgagtgatgaacgggtctgggagtatccctctgatgtagatgtg
gcggctaacaagccaatctccatagtgctcacccagtttcacttcctgctgctactgcct
gacagagtgaaggctgtgtgcactctgaatgggcaggttgtcttccaagacctgttcttg
gagaagtttggctcgttgaagtgcatgatcaaagatcccacagtcgggcagatctggatc
tacacggagaaagttgtattccgctaccacgtacaacgggaatcgagagatgtctggaag
atgtacatgaacattaacaagtttgatctggccaaagagtactgcaaagaccgtcctgag
tgcctggatattgtgttggcaagagaggcagaacactccttccaaaacaagaggtaccta
gatagtgccaagtgttatgcactgacccagaactactttgaagagattgcccttaagttc
attgaagccaagcaggaggaggcattgatggagtttctgctcaagaaactggccagctta
aagtcctctgaaaagacccagacaactttgctgaccacctggttaacagagctctacttg
aatcggctaggtgctctggaggggaacacctcgaaaaggaatctctttgaggcaactcgg
gagaagttctgcagcttcctgagcagccccagaaacaaagagtgcctgttcaataaccga
gcgtccatctatgagttgctagcaagccatggggacacagaacacatggtctatttttca
gttattatgcaggactatgagagagtggtagcccatcactgccagcacgatgactatgat
gaagccctaaacatccttaccagacacagagatgagaagctcttttacaagttctctccc
gtcctgatccagcacatccccaagaaggtggttgatgcttggatctccatgggcacgaaa
ctggatgccaggaagctcatacctgccctcgtcaactacagccaaagtgggagcacccaa
cagatcagtgaagctattcgatacatggaattctgtgtgtgtgagctggaggaaactgag
caagccattcacaactatctgttgtctctctatgctttgtgtcggccagactcgctgcta
tcatatctcaaacaagcaggagccaaccctaacaggatccactatgacctgaagtatgcg
cttcggttgtgtgcagagcatggacaccaccgagcctgtgtccatgtttacaaagtgatg
gagttatatgaggaagcagtggatctagctctgcaggtggacgtggatctagcaaagtca
tgtgcagacctccctgaagaggatgaggaactccggaagaagctctggttgaaaattgct
cgccacgtggtccaggaagagaaggacgtcaagaaggctatggcctgcctttctagctgc
aacctactaaagattgaagacgtccttcccttcttccctgactttgtcaccatcgaccac
ttcaaggaggcaatctgcaactctctggaggactacaacaggcacattgaggagctgaag
agagagatggaggaagctacacagagtgccaagagaatccgggaggacatccaggagatg
agaaacaaatatggctctgtggagcctcaggagaagtgcgcagcctgtgactttccactc
ctaaaccgccctttctaccttttcctttgcggccacatgttccactatgactgtctgttc
caggcagtttttccaaacctgcctgcctacaagcaagctaagctagaagaccttcagaag
aagctgggagccacaagccagccctccaaagcccatcatcgccccaaggacacagatgcc
accagcatggggaagggacagcagagtcgggaacagatcaaagcagacattgatgatatt
gtagcagctgaatgcgtgtactgtggggagctgatgatccggtccatagacaagcctttc
attgacccacaaaagtatgaagaagagaggcagagttggctgtag
DBGET
integrated database retrieval system
