KEGG   Lepidochelys kempii (Atlantic ridley): 140913380
Entry
140913380         CDS       T11378                                 
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
lkp  Lepidochelys kempii (Atlantic ridley)
Pathway
lkp04382  Cornified envelope formation
lkp04510  Focal adhesion
lkp04512  ECM-receptor interaction
lkp04518  Integrin signaling
lkp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lkp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    140913380 (COL4A2)
   04518 Integrin signaling
    140913380 (COL4A2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    140913380 (COL4A2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    140913380 (COL4A2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    140913380 (COL4A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lkp04147]
    140913380 (COL4A2)
   00536 Glycosaminoglycan binding proteins [BR:lkp00536]
    140913380 (COL4A2)
Exosome [BR:lkp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   140913380 (COL4A2)
Glycosaminoglycan binding proteins [BR:lkp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   140913380 (COL4A2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 140913380
NCBI-ProteinID: XP_073205779
LinkDB
Position
1:107283773..107533130
AA seq 1728 aa
MGDEAKMRSSRFLLSRRALWQAMQVVLLLVLTSLLTGRVKAGGKSYTGPCGGRDCSRGCE
CFPEKGGRGQPGLLGPQGFPGPPGLMGIPGLEGHKGHKGERGQPGVTGPKGEVGLRGVTG
FPGADGVPGHPGQPGSRGKPGHDGCNGTRGDAGEQGSQGPSGQPGFFGIQGPKGQKGEPF
VMTPELASKFRGEPGEPGLLGFPGPQGALGVVGLIGPTGNPGRPGPPGPPGPPGPPGNRG
LGFYGEKGEKGEIGPQGPPGLPSTRELIVSPDTILAEQYKGEKGIKGETGEPGTQGLPAY
SAEDGEEGIIGFPGLRGLPGINGIPGAAGEKGFQGFDGMPGSSGPKGMKGEQGERGFQGP
PVYTQYPIRRKGVRGDPGLPGVPGPAGDLGDQGDPGLPGLPGSSDGFPDGSERRGLRGEM
GPKGFSGEPGFLATKPGPPGSDGKLGLPGLPGPPGPPGTPGYPFGLKGRQGDPGEAGSRG
FPGFRGQKGFKGETGDCKCIESEEARRGPAGPPGPPGFPGPTGHPGRKGDNGDQGQHGLP
GFSGAKGFPGAVGFPGPKGEKGDSRYVTTKGTKGDPGGPGLSGIKGEDGFPGKNGIDGLP
GLPGLPGDGVRGSPGDPGYPGTQGEKGFLGETGLPGAGLPGPKGYHGPPGDSGTYGNPGL
QGPPGPRGTPAQLDCNQVTEDLSRGDGTKTVWSGTECVRAPKGAPGKPGLPGAMGAKGAK
GIPGEPGLDGFQGLKGSQGDPGREGFPGPRGFTGSRGDGGPPGLPGLQGNPGSAGKPGAP
GPAGPKGIAGEVLGAAPGTPGDFGPSGFPGLKGLQGDHGVPGIRGAGGTPGLPGSKGQQG
PPGPLGLPGLPGRPGLHGFPGLPGQQGPPGRTGSPGFVGSLGARGDQGDQGFPGPVGMKG
LAGDKGELGNKGVQGTPGVPGLPGIDGMPGFPGLKGAKGSPGIGGFKGMLGQKGKPGLKG
IKGEVGSFGNLGFKGLQGEPGHKGDRGDQGPAGKPPKIISSMLSEVKGEKGDIGEPGLKG
GLGFKGTKGMPGLPGKPGVPGLPGSTSHIEGDKGDTGIKGVTGVQGYPGTIGPPGIRGFP
GTTGIRGEKGIEGIRGDYGRPGSAGQTGDRGDTINLPGSTGLKGEAGVTGSLGVKGTRGD
KGEGGDPGFIGIEGLKGTQGFPGLKGQKGFPGLVGPPGSQGDPGIPGFQGEKGSHGWPGV
AGKAGLPGFRGISGLDGLPGSKGLPGSPGPDAYGAEGFPGIYGDKGEAGKPSSIEGTRGA
PGQKGERGNPGERGPIGNLGSDGIPGFPGVSNISGILGDVGSPGLDGVPGYPGPRGRPGI
LAPAGSKGEDGQIGVLGEDGQKGPRGDPGPPGRTGISGYPGPKGHKGAQGLMGTLGLVGA
FGDTGPTGPKGDRGPTGFQGPPGSPGLPAVPPKLVTHQGTAGPHGNIGPQGISGEMGPHG
PPGDPGFRGPPGKPGFQGRGGMSALPGFRGDQGPSGFPGLAGFEGEPGRPGNPGLPGMPG
RSVNIGYLLVKHSQSEQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFST
MPFLYCNPGDVCYYANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVH
SQDVSIPHCPEGWRSLWIGYSFLMHTGAGDEGGGQSLVSPGSCLEDFRATPFIECNGARG
TCHYYANKYSFWLTTINQQFQSLPSADTLKAGLIRTHISRCQVCMKNL
NT seq 5187 nt   +upstreamnt  +downstreamnt
atgggagacgaagcaaagatgagaagctcgcggttcctcctctcacgtcgtgccctttgg
caggctatgcaggtcgtgctgctcttggtgttgacctcactgttaactggcagagtaaaa
gctggtggaaaatcttacacaggaccatgtggaggaagagactgtagtaggggatgtgaa
tgtttccctgaaaaagggggccgtggtcaaccaggactacttggacctcagggattccct
ggaccaccgggattaatgggtatcccaggtttagaaggtcacaaaggtcacaaaggtgaa
agagggcaacctggagtaactggaccaaaaggagaagtggggctaagaggagtaactggt
ttccctggtgcagatggtgttcctggtcatcctggtcagccaggatcaagggggaaacca
ggtcacgatggctgcaatgggaccagaggtgatgctggtgaacaaggaagtcaggggccc
agtggtcaacctggtttctttggaatccagggaccaaaaggtcagaagggggaacctttt
gtaatgactcctgaactagcaagcaaattcaggggagagcctggtgagccgggattgttg
ggctttccaggacctcaaggtgctctcggtgttgtgggtttaattggtccaacaggaaat
ccagggagaccaggaccacccgggccaccgggacccccaggaccaccaggcaacaggggc
cttggtttttatggagaaaaaggtgaaaagggtgaaataggtccacagggccctcctggt
cttccatctacgagggagctgatagtttccccagacacaatcttagcagaacaatacaag
ggtgaaaagggaataaaaggagaaacaggagaacctggaactcagggtttacccgcatat
tcagcagaagatggagaagaaggaataatagggtttccaggactaaggggattacctggt
atcaatggcatcccaggagctgctggggaaaaaggttttcaaggatttgatggcatgcca
ggcagcagtggtcctaaaggaatgaagggagagcagggtgagagaggttttcaaggacca
cctgtttatactcagtatcccattcgaagaaaaggtgtaagaggtgatccaggattgcca
ggtgttcctggacctgcaggagacctgggggaccaaggagatcctggccttcctggtctt
cctggctcatcagatggctttcctgatggctctgaaagaagaggtttacgtggggaaatg
ggtcccaaaggttttagtggagaaccaggttttctagcaacaaagccaggtccacctggt
agtgatggtaaacttggacttccaggattacctggcccacctggccctccaggaacacca
ggctatccttttggactgaagggacgtcaaggggatccaggagaggcgggcagccgaggt
ttccctgggttccgaggacaaaaaggatttaaaggtgaaacaggggactgtaaatgtatt
gaaagtgaggaagccagacggggtcctgctggtccacctggtccaccaggttttccaggc
ccaactggacatcctgggcggaaaggagataatggagatcaaggtcagcatggtcttcca
ggcttctctggtgcaaaaggatttcccggtgcagtcggatttcctgggccaaaaggggag
aaaggagattctagatatgttacaacaaaaggtaccaaaggagacccaggaggtcctgga
ctatctggcattaaaggtgaagatgggtttccaggaaaaaatggtatagatggcttacca
gggcttcctggccttccaggtgatggtgtaagaggttcaccaggtgaccctggttatcca
ggaacacaaggtgaaaaaggctttctgggagagactggtctgccaggtgcaggcttacct
ggcccaaaaggataccatggccctccaggtgactctggaacatatggaaatccagggctt
caaggtcccccaggtcctcgaggtacacctgcccaattagattgtaaccaagttactgaa
gatctttctaggggagatggcaccaagacagtttggtcagggacagaatgcgtgagagca
ccaaaaggagccccaggaaagccaggattgccaggagctatgggtgcaaaaggtgctaaa
gggattccaggtgaaccaggtctggatggattccaagggctaaaaggttcacaaggtgat
ccaggtcgtgaaggatttccaggtcctcgaggttttactggatcccggggagatggaggc
ccaccaggtctaccagggctacaggggaatccaggcagtgcaggaaaaccaggtgcccca
gggcctgcaggtccaaaaggaattgcaggtgaagttttaggagcagcaccgggcacccca
ggggattttggaccatctggattcccaggattgaaaggcctacaaggagatcatggagta
ccaggaattagaggagctggtggtactccaggtttgccaggatccaaaggacagcaagga
cccccaggtcctcttggtttgcctggcctgccaggacgaccaggattgcatggattccca
gggcttccaggacagcaaggacctcccggcagaactggctcaccaggatttgttggttca
cttggtgccagaggagatcaaggtgaccaaggttttcctggtccagtgggcatgaaaggt
ctggccggtgacaaaggtgaactcggtaacaaaggagtacaaggaacacctggggtgcct
ggtctcccgggaatagacggaatgcctggttttccagggttaaaaggtgctaaaggttca
cctggtattggaggtttcaaaggtatgttaggccagaaaggaaaaccaggactcaaagga
atcaaaggtgaagtcggctcttttggcaatctgggttttaaaggtctacagggggaacca
ggccataaaggtgaccgtggggaccagggtccagcaggaaaaccaccaaagatcatatca
agcatgctgtctgaggttaaaggtgagaaaggagatataggagagcctggcctaaaagga
ggtttaggctttaaaggtactaaaggaatgccaggcttacctggcaaaccaggagttcca
ggtttgcctggatcaactagtcacattgaaggtgataaaggagacactggtattaaagga
gtgacaggtgttcaggggtatcctggtacaattggacctcctggcatacgaggtttccct
ggtaccactggaatcaggggtgaaaagggtattgaaggaatcagaggtgattatggtaga
cctggctctgctgggcaaactggtgatcgaggagatactataaacttaccaggaagcaca
ggtctgaaaggagaagctggtgtaactggatcattgggtgtgaaaggaaccagaggagat
aaaggtgaaggaggtgatcctggttttattggcattgaaggcctaaaaggcacccaaggt
tttcctggtttaaaggggcaaaaaggcttcccaggactggttggaccaccaggatcacag
ggagacccaggtattcctggatttcaaggtgaaaaaggaagtcatggatggcctggtgta
gcgggaaaagcaggtttacctggcttccgaggaatcagtggattggatggtttgccaggc
agtaagggcttgccaggctccccaggtccagatgcatatggggctgaaggtttcccaggt
atttatggtgacaaaggggaagcaggcaaaccgagcagtattgaaggcaccagaggagca
ccaggccagaaaggcgagagaggcaatccaggggaacgaggcccaattggtaacctaggg
tctgatggaattccaggctttcctggagtttcaaacatatcaggaatacttggtgatgtg
ggttctccaggtctagatggagtgccaggctatccaggaccacggggcagacctggaatt
ttagctccagcaggaagcaaaggagaagatggtcaaataggtgtgcttggagaagatggt
caaaaaggacctagaggtgaccctggaccaccagggagaactggaatttcagggtaccct
ggaccaaaagggcataaaggcgcacaaggtctcatgggtactcttggcttagtgggagct
tttggtgacacagggcccactggacccaagggggacagaggacctactggttttcaagga
cctccagggtctcctgggctgcctgcagtcccccctaagctggtcactcaccagggtaca
gcaggcccacatggaaatataggtccccaaggaatatctggtgagatggggccccacggt
ccaccaggtgatccaggttttagaggcccaccaggtaaaccagggttccaaggaagaggt
ggcatgtcagctcttccaggttttagaggagatcaaggaccatcaggtttcccaggtcta
gcaggctttgagggtgaaccaggccgtccaggtaaccctgggctaccaggtatgccaggt
cgcagtgttaacattgggtaccttctggtgaagcatagccagtctgaacaagagccaatg
tgcccagttggtatgaacaaactctggagtggctacagtctactgtattttgaaggacag
gaaaaagcacataaccaggaccttgggctggctggatcctgtttggctcgttttagtacc
atgcctttcctctactgtaaccctggggatgtctgttattatgcaaacagaaatgataaa
tcctactggctctcaaccacagcacctcttccaatgatgcccgtggcagaagaagaaatt
agaccatatatcagtcgttgttccgtctgtgaagccccagctgttgcaattgctgtccat
agtcaagatgtttctattccgcactgccctgaagggtggcgcagtttatggattggatat
tccttcctcatgcacactggagctggtgatgaaggtggaggacagtcactggtttctccg
gggagctgtctggaagacttcagagctactcctttcattgaatgcaatggtgcccgagga
acctgccactactatgcaaacaagtatagcttctggcttaccactattaaccagcaattc
cagagcttgccctcagcagatacgctcaaggcaggtctcatccgaactcatatcagcaga
tgtcaagtgtgcatgaaaaatttgtaa

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