Lepidochelys kempii (Atlantic ridley): 140915813
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Entry
140915813 CDS
T11378
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03273
Virion - Lassa virus and SFTS virus
lkp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
140915813 (PCDH1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
140915813 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lkp01009
]
140915813 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lkp04515
]
140915813 (PCDH1)
Protein phosphatases and associated proteins [BR:
lkp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
140915813 (PCDH1)
Cell adhesion molecules [BR:
lkp04515
]
Cadherins
Protocadherins
140915813 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
140915813
NCBI-ProteinID:
XP_073212293
LinkDB
All DBs
Position
8:39945940..40075314
Genome browser
AA seq
1219 aa
AA seq
DB search
MEKPEEPRTRRSPQPTPVQHRMTWLAACLGLWLFLQLPILGAGTRVVYKVQEEQPPNTLI
GSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQSQFPGDRCFL
EFEVSITDLKMNSSPRLLEGQIEVLDINDNTPNFASPVITLAIPENTNIGALFPIPLAMD
RDAGANGVASYELLAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQD
GGSPPRASSALLRITILDMNDNTPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAE
IDYSFHQATDMVRRLLRLDRATGLITVQGPIDREDINILKFSVLAKDKGANPKSARTQVV
VTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVV
AGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEAVKEYTIEIVAVDSGNPPLSSTNSLKV
QVVDVNDNAPVFSQSLTEVAFPENNAPDDLVVEVSASDADSGSNAKLVYSLVMDPSSKGV
FSIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKGTASVAINVVDRNDNDPKFML
SSYNFSVMENMPPLSPVGMVTVIDADKGNNARIQLSVEQDNGDFVIQNGTGTILSSISFD
REQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNASYKHILPHTSPGQ
QVSKVKAEDIDSGVNAELTYSITGGNPFELFQISSQSGDITLEKEILRKHHGLHRLVVRV
NDRGKPSRHGTALVHFYINETLANRTLLETLLGHSLDTPLDIDIAGDPEYERGKQRSNIL
FGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQGNKSSKSKGKVKK
SKSPKPPKPSEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPL
PSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLP
HRRVTFSAANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPD
GSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPNHRPKNALKLSTFV
PYQERGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNCSHEPCKDSPMEEIPLTQTS
DFQPATTPSSQTAKREIYL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggagaagccggaggagccgcgcacacggcgctccccgcaaccaacccctgtccagcac
aggatgacgtggctggcagcctgcctgggcctgtggctcttcctgcagctccccatcttg
ggcgctgggacacgcgtggtctacaaagtgcaggaggaacagccgcccaacacactcatt
gggagcttggctgccgactacggctttcctgacgtggggcacctctacaagttggaagtg
ggggccccctacctgcgtgtggatggcaagactggggacatttacaccacggagacctcc
atcgaccgagagagcctgcgggagtgccagagccagttcccaggggaccgctgcttcttg
gagttcgaggtgtccatcacggacctgaagatgaacagcagcccacgcctgctggagggg
cagatcgaggtgctggacatcaacgacaacacgcccaactttgcctcacccgtcatcacg
ctggccattcctgagaacaccaacattggggcactcttccccatccccctggccatggac
cgtgatgcaggagccaatggggtggcctcctacgagctcctggctgggcctgaggcgcag
gagctctttggcctacaggtggctgaggatcaggatgagaagcagccacagctgattgtc
atggggaacctggaccgagagcagtgggactcctatgacctgaccatcaaggtgcaggat
ggaggcagcccaccacgggcaagcagcgccctgctgcgcataaccatcctggacatgaac
gacaacacccccaagttcgagaaggccctgtacgaggcggagctttcggagaacagcccc
gtggggcactccgtccttcaggtgaaagccaacgactcagatcagggcgccaatgccgag
attgactactccttccaccaggccacggacatggtgcgccgcctgctgcgcctggacagg
gccacgggcctcatcactgtgcaggggcccattgaccgggaggacatcaatatcctcaag
ttctctgtcctggctaaggacaagggggccaatcccaagagtgcccgcacccaggtggtg
gtgaccatcaaggacatgaatgacaacgccccctccattgaaatccggggcattggcctt
gtcacccatcaggacggcatggccaacatctctgaagacgtgcctgtggagacggctgtg
gctctggtacaggtgtctgaccgggatgagggtgagaacgctgtggtcacctgtgtggtt
gctggcgatgtcccgttccagctgagacaggccagtgagacgggcagtgacagcaagaag
aagtacttcctgcagaccaccacgccgctggactacgaggcggtgaaggaatacaccatc
gagatcgtggctgtggactcggggaacccgcccctctccagcaccaactctctcaaggtg
caggtggtggatgtgaatgacaacgccccagtcttcagccaaagcctcaccgaggtggcc
ttccccgagaacaatgcacctgatgacctggtggtggaggtgagcgccagcgacgctgac
agcggctccaatgccaagctggtttactccctggtcatggacccctcctccaagggcgtc
ttctccatcgaccctgactcaggcgagatccgagtgaagaccgtgctggaccgggagcag
agggagcgctacgagttcctggtggtggcagctgacaagggcagtcccagtctcaagggc
actgcatctgtggccatcaatgtcgtggacaggaacgacaacgaccccaagtttatgctg
agcagctacaacttctcagtgatggagaacatgcctcccctgagtccggtgggcatggtg
acagtgattgacgctgacaagggcaacaacgcccgaatccagctgtcagtggagcaggac
aacggggattttgtcatccagaatggcactggcacgatcctctccagcatctcttttgac
cgggagcagcagagcacgtacacctttcggctcaaagctgtggatggcggggaccctccc
agatccgcctacgtgggggtgaccatcaacgtgctggacgagaatgacaatgcccctttc
atcacctccccttccaatgcctcttacaagcacatcctgccccacaccagccctgggcag
caggtcagcaaggtcaaggccgaggacattgactcgggggtcaatgcagagctgacttac
agcatcacggggggtaaccccttcgagctgttccagatctcgtcgcagagcggggacatc
acgctggagaaggagatcctgcgcaagcaccacggcctgcaccgcctggtggtgcgggtc
aatgacaggggcaagccctcacgccacggcaccgcactggtgcacttctacatcaatgag
accctggccaaccgcacgctgctggagaccctgctgggacacagcctggacacgccgctg
gacatcgacattgccggcgaccccgagtacgagcgcggcaagcagcgcagcaacatcctc
ttcggcgtcattgccggcatcgtggccgtcaccctggtcatagtactggtggtgctggtg
cgctactgccggcagagggaggccaagagcggctaccaggcgggcaagaaggagaccaag
gacttgtacgcccccaagcagggcaacaagagcagcaagagcaagggcaaagtgaagaag
agcaagtcccccaaaccgcccaaaccgtccgaggatgaggaggagacagggctgcagaag
tccctcaagttcaacctcatgaacgactctgtcagtgatagcccccgcatccacctgcct
ctcaactacccgcccgggagcccggacttggggcgccactaccgctccaactccccactg
ccctccatccagctgcagccccagtcaccctccgcctctaagaagcaccaggtggtgcag
gacctgcctgccactaacacctttgtgggcactggggacaacaactcaacgggctccgaa
cagtactctgactacagctaccgcaccaacccccagaaatacaccaacaagcagttacct
catcgccgagtgacattctctgcagctaatcaggcacaggacttgcaggacccctctcaa
catagttactatgacagcgggctagaagagtcagagacgccaagcagcaagtcatcatca
gggccccggattgggccactagctcttcctgaggatcattatgagcgcaccacacccgac
ggtagtattggggagatggagcaccctgagaacgatctccggcctctgcctgatgttgcc
atgactgggacctgcacccgggaatgcacggagttcggccactctgacacctgctggatg
cctggccagtcctccccgaaccacaggcccaagaatgccctgaaactctccacttttgtg
ccttaccaagaacgggggagtcaagagcaagttgggaatggcagccccagactctcggaa
gagcgcagcaccaaaatggccaacctccgcctgctccccacatacagtgccttctccaac
tgtagccatgagccctgcaaggactcccctatggaggaaattcctctcacccagacctcg
gacttccagccagccaccaccccctcgtctcaaaccgctaagagggagatctacctgtga
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