Lepidochelys kempii (Atlantic ridley): 140915888
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Entry
140915888 CDS
T11378
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp04510
Focal adhesion
lkp04512
ECM-receptor interaction
lkp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140915888 (TNR)
04518 Integrin signaling
140915888 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140915888 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lkp00536
]
140915888 (TNR)
Glycosaminoglycan binding proteins [BR:
lkp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140915888 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
FN3_DSCAM-DSCAML_C
EGF_Teneurin
EGF_Tenascin
Fn3_PBP1
Pur_ac_phosph_N
Fn3_Dep-1_3rd
Fn3_ROS1
Fn3_VIN3
EGF_2
FN3_Tor_3rd
Fn3_R-PTP-O
DUF7949
TMF_TATA_bd
DUF1192
TSC22
Motif
Other DBs
NCBI-GeneID:
140915888
NCBI-ProteinID:
XP_073212561
LinkDB
All DBs
Position
8:complement(49931509..50307020)
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AA seq
1356 aa
AA seq
DB search
MGADSENLVLRNMLISLNLLLLGSVLKPFECRLEVTTERTRRQVVDKEGNFANYSLPIKE
QSMVFNHVYNINVPLDTFCSSALEASSDQEVSSEDDRMTEYTEQTSDSESQVTFTHRINL
PKQACKCFTSVQVMQELQSRIEMLEREVSMLRDQCNSNCCQENAATGQLAYISHCSGHGN
FSLESCGCICNEGWAGKNCSEPHCPMGCSSRGICVEGQCICDNDYSGDDCSELRCPTDCT
SRGLCVDGECVCEEGYAGEDCSELRCPDDCLGKGRCTNGTCICQEGYVGEDCGQLRCLNA
CSGRGFCQKGMCACEEGYKGQDCSAVAPPEDLRVAGISDRSIDLEWDGPMAVTEYVISYQ
PVVPGGLQLQQRVPGEWSAVTIKELEPSQTYNITIYAVISDILSVPVTTKVTTHLSTPKG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQLPSSVTTFNQTGLKPGEEY
IVNVVALKEQARSPPTSDSISTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDYILLKYGL
TNGEGGKTMFRLQPPLSQYSMQALRPGSQYEVSISGVRGTNESDPAVTTFTTEIDAPKNL
RVGLRTLASLALEWDNSEAEVQNYRVVYSTLAGEQYHEVLVPRNAGLTTRATLTDLVPGT
EYGIGISAVMDSKQSVPATMNARTELDSPRNLMVTASTETSISLAWTQAKGPIDHYRITF
TPASGMASEVTAPKDKSELTLSDLDPGTEYTISVIAERGRQQSLESTVDAFTGFRPITQL
HFSHVTSSSLNITWSDPSPPADRFILNYNPRDKEETKQVMLDATKRHATLSGLQPSTEYI
VSLVAVHGLVSSEPIVGSITTGIDPPKNLTVGNVTKDSVMIFWAPPIAAFDHYRVSYRSA
QGRVDSTAVANNVAEYTVSRLQPATKYEISLSSVQGREESERVSSTVYTAMDHPLGLTAT
NVTPTEALLQWNPPLSEVENYVIVLTHYTVAGETILVDGANQEYQLIDLMPSTSYMVTMY
ATNGPLTSSTISTNFTTLLDPPTNLTATEVTRRSALLSWQPPMAEIENYIMTYRSTDGSR
KELIVDAEDTWIRLEGLLETTEYTVRLQAAQDAMRSGFTSTSFITGGRVFANPQDCAQHL
MNGDTMSGLYTISINGDLSQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWTDYRVGFG
NLEDEFWLGLDNIHKITSQGRYELRIDMRDGQETTYAYYDKFSLGDARSLYKLRIGDYNG
TSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WFHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgggggctgacagtgaaaacttagtcctgaggaacatgcttatcagtctcaacttgctc
ctgctgggatcagtcctcaagccctttgagtgccggctagaggtgacaacagagcggacg
aggaggcaggtagtggacaaggaaggcaactttgccaactacagcctgcctatcaaggag
caatccatggtcttcaaccatgtatacaacattaacgtccccctggacaccttctgctca
tcagcgctcgaggcatcatctgaccaggaggtgagttcagaagacgacaggatgacggaa
tatacggagcagacctcagacagcgagagccaggtcaccttcacccacaggataaacctc
cccaagcaggcttgcaagtgcttcacctctgtgcaggtcatgcaggagcttcaaagcaga
attgagatgctggagagggaggtgtccatgctacgggaccaatgcaactccaattgctgc
caagaaaatgcagctacagggcagctagcttacatctcccactgcagtgggcatggtaac
tttagcctggagtcctgtggctgcatctgcaatgaagggtgggctggaaaaaactgctca
gagccccactgccccatgggctgttccagccggggaatctgtgtagaaggccagtgcatc
tgcgacaacgactacagtggggacgattgctcagagctccgctgcccgacggactgtacc
tcccgaggcctctgcgtggacggggagtgcgtctgtgaagaaggttatgcaggggaagac
tgcagcgagctgaggtgccccgatgactgcttgggaaaggggagatgcaccaatggcacc
tgcatctgtcaggagggctatgtgggggaagactgcggtcagctgagatgcctgaatgcc
tgcagcggacgtgggttctgccagaaggggatgtgcgcttgtgaggaaggttacaaggga
caagactgctcagcagttgccccacctgaggatctgcgagtggctgggatcagtgacagg
tccattgacctggaatgggatgggccaatggcagtgacagaatatgtgatctcctaccag
ccagtggtgccagggggccttcagctccagcaacgggtgcctggagaatggagtgctgtc
accatcaaggagctggagccaagccaaacatataacatcaccatctacgctgtcatcagc
gacatccttagcgtccccgtcactaccaaggtgactacccatctctccactccaaaaggg
ctgcagttcaagacgatcacagagaccaccgtggaggtgcagtgggagcccttctctttc
tcttttgatggctgggagataagcttcatccccaagaacaatgaaggtggcgtcatcgca
cagcttcctagcagtgtcaccaccttcaaccagacaggactgaagcctggggaagaatac
atcgtcaatgtggtagccctcaaggagcaagccaggagcccccctacctccgacagcatc
tccaccttaattgatgggccaacccaaatcctggtgcgagatgtctcggacacagtggcc
tttgtggagtggaccccaccccgagctaaagtagactacatcctgctgaagtacggcctc
acgaatggggaaggggggaagaccatgttccgactgcagcctcccctgagccagtactca
atgcaggccctgaggcccggctcacagtacgaagtctccatctccggggtccgagggacc
aacgagagcgaccctgctgtcaccaccttcacaacagagatcgatgcacccaagaacctc
cgggtgggcttgcgaacgttggccagcctggcactggagtgggacaacagtgaggcggag
gtgcagaactatagggtggtgtacagcacactagcaggcgagcagtaccacgaggtgctg
gtgccacggaatgctggcctgacaacccgggccaccctcacagatctggtgccaggaacc
gaatatggaattgggatatcggccgtcatggacagcaagcagagcgtcccagccaccatg
aacgcgaggactgagcttgacagccctcggaacctcatggtgacagcctccacggaaacg
tctatctccctggcctggacccaggcaaagggccccatcgaccattaccgcatcaccttc
actccagcttccgggatggcctccgaggtgactgcacccaaggacaagtctgagctgaca
ctctcagacctggatcccggtacagaatataccatctcagtcattgccgagagaggccgt
cagcagagcctggagtccacagtggatgcattcacagggttccgaccaatcacacagctg
catttttctcatgtgacttcctccagcctgaacatcacctggagtgacccctcccctcca
gcagacaggtttatcttgaactacaatcccagagacaaggaggagaccaagcaggtcatg
ctagatgccaccaagagacacgccaccttgtctggcttgcaaccatctacagagtacatc
gtgtcactggtggctgtgcatggtttggtcagctccgagcccatagtgggctccatcaca
acagggatcgaccccccgaagaacctcactgtgggcaacgtaaccaaggactcagtgatg
atcttctgggcccctcctatcgcagcttttgaccactacagagtgtcctaccgatctgca
caagggagagtggacagcacggctgtcgccaacaacgttgccgaatacaccgtaagtcgc
ctgcagccagcgaccaagtacgagatcagcctgagcagcgtgcagggccgggaggagagc
gagcgggtctccagcaccgtgtatacagccatggaccaccctctgggtctgactgccacc
aatgtcaccccaacagaagccctgctccagtggaacccacctctttccgaagtcgagaac
tacgtcattgtgctaacacactacacagttgcaggggagaccattctagtggatggggcc
aaccaagagtaccagctgatcgacctgatgcccagtaccagctacatggtcaccatgtat
gccaccaatgggcctcttacaagcagcaccatcagcaccaactttacgactcttctggat
cccccgactaacttgactgccactgaggtcacccgccggagcgccctcctttcatggcaa
cctccaatggcagagatcgagaactacatcatgacctatagatcgactgatggaagccgg
aaggagctgatagtcgatgctgaggacacctggatccgcctagaggggcttttggagacc
acggaatacaccgtacgcttgcaggcagcccaggatgcgatgaggagtggattcacctcc
accagcttcatcacaggaggccgcgtgttcgctaatcctcaggactgtgcccagcatttg
atgaatggcgacaccatgagtggactctacaccatctccatcaatggggacctcagccag
cgagtgcaagtgtactgtgacatgaccacggatgggggaggatggattgtgttccagaga
cggcagaatgggctgacggatttctttcgaaagtggacggattaccgcgttggctttgga
aacctagaggatgagttttggctggggctggacaacattcacaagatcacatcacaggga
cgctacgagctacgaatagacatgcgagatggccaagagacaacttacgcctattacgac
aagttctcccttggtgacgccaggagtttgtacaagctccggataggagactacaacggc
acttccggagattcactcacctaccaccagggacgtccgttctccaccaaggacagagac
aatgacgttgctgttacaaactgcgccatgtcatacaaaggtgcctggtggtataagaac
tgccaccggaccaacctcaacggcaagtacggcgagtcccggcacagtcaggggattaac
tggttccactggaaaggccacgagttctccataccctttgtggaaatgaagatgcgaccc
tacaaccaccgtaacatctcgggaaggaaacgacggtccctacagctgtga
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integrated database retrieval system
