Lepidochelys kempii (Atlantic ridley): 140917306
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Entry
140917306 CDS
T11378
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03008
Ribosome biogenesis in eukaryotes
lkp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140917306 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
140917306 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140917306 (XRN1)
03009 Ribosome biogenesis [BR:
lkp03009
]
140917306 (XRN1)
03016 Transfer RNA biogenesis [BR:
lkp03016
]
140917306 (XRN1)
03036 Chromosome and associated proteins [BR:
lkp03036
]
140917306 (XRN1)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
140917306 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
140917306 (XRN1)
Ribosome biogenesis [BR:
lkp03009
]
Eukaryotic type
Pre-60S particles
RNases
140917306 (XRN1)
Transfer RNA biogenesis [BR:
lkp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
140917306 (XRN1)
Chromosome and associated proteins [BR:
lkp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
140917306 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140917306
NCBI-ProteinID:
XP_073215905
LinkDB
All DBs
Position
9:32324218..32402531
Genome browser
AA seq
1784 aa
AA seq
DB search
MGVPKFYRWVSERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLHEHLKYFVNMKISTDKSWHGVTVYLSGHETPGEGEHK
IMEFIRSEKTKPDYDPNTRHCLYGLDADLIMLGLTSHESHFSLLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKVKISFQYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYKTYMAILPELGGYINESGHLNLQRFEKYLTKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARSHKQKKQKVQENSMCLAALEKTEDGIMTSSKNALEDEQ
EDEDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWY
YPYHYAPYLSDIRNISKLKIQFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKCLLEDEKRRNTHSECLM
YWYDKDTEFKYLSPWPEKFPAIQRCHTRYKTISLDAWHVEITHNKITKVNKSALYFCGFP
TLKHIAHEFCLKKSGVQVFQQSSHGENMLLEIISDKDSKEQSVENVASLVLGKSVFVNWP
HLEEARVISVSDGETKFYLEEPHGTQKLYLGNAVPPTKVAYVGEKEQNIWLKEVQGISEH
YQRRKGIIINETSVVVYAQLLTGRRYQLNQNGDVYLEKQWSKQVLPFVYQTIVKDISAFD
SRFSNIKTLDDLFPPGSTVFMLGSPYYGCTGEVQDSCDVITEGRIRVVFSISCEPQLDSL
IQNQHKYSVKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVRNEWMYSSAVEQLLAEYLERVPELFSYIAKNSQEDIFYEDDIWPGED
ENGAERVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEELEKCKQRKSNKKVRVTV
KPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGVKGASREMDVLF
EVLFDEEFPGGLTIRCSPARGYRLPTSALINLSHGSRSETGNQKLTAIVKPQPAVNHYNS
CSSDSSSVCSQKVHLGGLNHSPRSLFVPTRQLNGRQHYNLRAENQGNSILLQKGSFLGGN
QKQKAQNKQDDEFCSIWQSLQGSGKSQHVQQNMNEKGAILPQETKPETGNQLYKPGFNES
TLKGQQRKQEPFKKFKEDSKVPRYESQTHKISNKQNFAGANKYNVKLLKRNESPSVPVIQ
KASVDGSCIAGKARVGLLNKDSELENLLASLKISKENEVQSSYPKEERVTNEEHLSPQSF
AMKGTQMLKEILKIDGSDIESKNEMKPLINEVPATSDRQESHGAAMQHRQTKKMAAYMNK
PHSVGGPHNAQVLETGGHPLLGPQSALSTPVSELSRICSLVGMPQPDFSFLRTPQTMTVC
QVKLSNGLLVHGPQCHSENEAKERAAFFALQRLSSLGVNFSLPPPPSMFPNHQSVGAPVP
PGSIPPVFTQPTANMMPPSSHMFGPVPWRAPVPIHGKPYYPGSYHGNMPLAGTIPVGTHN
QFIPLQVTKKRAASKKNSEFKEFQSSLQAVPLKNEQLMYSDTNKPIQQDTSTTLKSPQAV
QSTACFQDNIATPDVPHNKSTPNISSKRKPRKLAVNFGAPKSSE
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccctaaattctaccggtgggtctcggagcggtatccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttgtacctggatatgaatggtatcatc
catcagtgttcacaccctaatgatgatgatgttcacttcagaatctcagatgataagatc
ttcgctgatatttttcactatttggaagtattatttcgcattattaaaccaagaaaagtt
ttcttcatggcagttgatggagtggctccaagagcaaaaatgaaccagcagcgtgggaga
cgttttaggtccgcaaaagaagcagaggacaaaataaaaaaggctttagaaaaaggagaa
gttctccctacagaagccaggtttgactccaattgtattacaccagggactgatttcatg
gccaggttgcacgaacatctgaagtattttgtaaatatgaagatttccacagacaaatcc
tggcatggcgtaactgtctacttatcaggccacgagacaccaggtgaaggagagcataaa
attatggaatttattcgatcagagaaaacaaagcctgattatgatccaaacacaagacac
tgtctatatggtttagatgctgacttgattatgcttggattaacaagtcatgagtcacat
ttctcactcttaagagaagaagtccggtttggtggcaaaaaatcccagagagcatgtgcc
ccagaagaaaccacatttcacttactgcacttgtcattaatgagagaatatattgactat
gaattttcaccagtaaaagtcaagatttcctttcaatatgacattgaaaggataatagat
gattggatcttaatggggtttcttgtaggcaatgactttattcctcacctacctcattta
catattaatcatgatgcgctgccgctactttataaaacatacatggctatcctgccagaa
cttggaggctacattaatgaaagtgggcatctgaacttacaacgctttgagaaatatctt
acaaaattgtcagattttgatcgtgaacatttcagtgaagtctttgtagacctaaaatgg
tttgaaagcaaagtaggcaataaatacctcaatgaggcagctggtattgcagcagaagaa
gcaagaagccataagcaaaagaaacagaaggttcaagaaaactccatgtgtttggctgct
ctagagaaaaccgaggatggaatcatgacttcttctaaaaatgcattggaagatgaacaa
gaagatgaagacctgtttgagactgagttcaggcaatacaagagaacgtattatatgact
aagatgggtgtggaagtagtttcagatgacttcctggctgatcaggctgaatgttatgtc
caggcaatacagtggattttgcactattactaccatggggttcagtcatggagctggtat
tacccttatcattatgcaccttacctatcagacattcgcaacatcagcaaactcaaaatc
cagtttgagttaggaaaacctttcatgccatttgaacagcttcttgcagtacttccagca
gctagcaaagatctgctacctaaatgttaccagcatttgatgactagcgaagattctcca
atcatagaatactatcctccagactttaaaacagatttaaatggaaaacagcaagaatgg
gaagcagtagtattaatcccatttattgatgagaaacgattgctacaagccatggaatct
tgcaacaagtgcctattggaagatgagaagcgaagaaatactcacagtgagtgcctgatg
tattggtatgacaaagacacagagttcaaatacctatcaccatggccagagaagttccct
gctatacaaagatgccacaccaggtataaaacaatatctttggatgcctggcatgtagaa
ataacccacaataaaataactaaagttaacaagagcgcattgtatttttgtgggtttcct
actctaaaacacattgcacatgagttctgtcttaaaaaaagtggggtacaagtattccag
cagagcagccatggtgagaatatgctgttagaaatcataagtgacaaggattcaaaagag
cagtctgtagaaaatgtagccagtttggtgcttggaaagtctgtttttgttaactggcca
caccttgaagaagccagagttatttctgtgtcagatggagaaactaagttttatttggaa
gagccacatggaacacagaagctttacctgggaaacgctgtgccaccgactaaagtggca
tatgttggagagaaagaacagaacatctggttgaaagaagttcaggggatttcagaacac
taccagaggagaaaaggaataattataaatgaaacctcagtagttgtgtatgcccagtta
ctcactggtcgtagatatcagctaaatcaaaatggtgacgtttatttggagaagcagtgg
tcaaaacaagttcttccttttgtttaccaaactattgtcaaggatatcagtgcttttgac
tctcgtttctccaacatcaaaaccttggatgatctgtttcctcctggaagtacagtcttt
atgctggggagtccttactatggctgcacgggagaagtgcaggattcttgtgatgtcatc
acagaaggtagaattcgtgtagttttcagtatctcatgtgaaccgcagcttgattcctta
atacagaaccagcataaatattctgtgaagtacaatcctggatacgttttagccagtcgt
cttggagtgagtggatatcttgtctccaggtttacaggaagcatatttattggaagagga
tccaggagaaatccacatggagaccacaaggcaaatgtgggcttgaatctgaagtttaat
aagaagaatgaagaggtccctggctatactaagaaggttagaaatgaatggatgtattct
tctgccgtagagcaacttcttgctgagtatttagaaagggtccctgaactgtttagttat
attgccaaaaatagtcaagaagatatattctatgaagatgatatttggcctggcgaggac
gagaatggtgctgagagagttcaagaaattgttgcctggctaaaggcgcatcctgtcagc
gctttatctcgttcatcttgtgacttacaaattctggatgcagctattgtagagaaaatt
gaagaggaattagagaagtgcaagcaaaggaagagtaacaagaaggtgcgagtgacggtg
aaaccccatttgctgtatagacctttagaacaacagaatggggttgttccagacagagat
gcagagtatcgactgtttgaccgtgttgtcaatgtgagggagaacttttctgttcctgtt
ggtcttcgaggtaccattataggagttaaaggagcaagcagagaaatggatgtactcttt
gaagtgttgttcgatgaagaattccctggaggcctaacaataaggtgctcacctgctaga
ggttatcgtctgccaacaagtgccttaattaacctatctcatggtagtcggtccgaaaca
ggaaatcagaaactgacagccatagtgaaaccacaaccagctgtgaatcattacaactca
tgctcatctgattcatcgtctgtatgctcacaaaaagtacatctaggaggtctcaaccat
tctcctcgttccctttttgttcctactcgacaactaaatggaagacagcattacaatctc
agggctgaaaatcagggaaattccattttactacagaaaggatcttttttgggaggcaat
cagaaacaaaaagctcagaataaacaagatgatgaattttgcagcatttggcaatcactg
caagggtctgggaaatctcagcatgttcaacaaaatatgaatgagaagggtgcaatccta
cctcaagaaacaaagccagaaactggcaaccagttgtacaaaccaggcttcaatgagagt
acccttaaaggccagcaaagaaaacaggagccatttaaaaagtttaaagaagattctaaa
gttccaagatatgaaagtcagacacacaaaatatcaaataaacagaattttgcaggagca
aataaatataatgttaagcttttgaagaggaatgaaagtccaagtgtgcctgtaattcag
aaggcttctgttgatgggtcctgtatagctgggaaggcaagagttggcttgttaaataag
gactctgaacttgaaaaccttctagcatccttgaaaatctccaaagaaaatgaagtgcaa
tcatcttatcccaaggaagaaagagtcaccaatgaagaacatctgtctccacagtctttt
gctatgaagggaacacagatgctcaaagaaattttgaagattgatggctctgacatagaa
agcaagaatgaaatgaagccactgattaatgaagttcctgctacctccgataggcaggaa
tcccatggggctgccatgcagcatagacaaacaaaaaaaatggctgcttacatgaacaag
cctcatagtgtaggaggccctcataatgctcaggttttggaaactggaggtcaccctctc
cttggcccacagtctgcgttgtctaccccagtatctgaactctctcgtatttgttccctg
gttggaatgccacaaccagatttctccttcctcagaacaccacagaccatgacagtttgt
caagtaaaattatccaatggcttattagtacatggacctcagtgtcactctgaaaatgaa
gccaaggagagagctgcattttttgcattacaacgattgagctctttaggagtgaacttt
tctttgccgccacctccatcaatgtttccaaatcatcagtccgtgggagctcctgtacca
cctggatccattcctccagtcttcacccaacccactgccaatatgatgcctccatcatct
cacatgtttggtccagtgccatggagagctccagtacctattcatggcaaaccttactat
cccggttcatatcatggtaatatgcctcttgcaggaactataccagttggtactcacaac
cagtttattcctctacaggtaactaaaaaaagggctgctagcaagaaaaattccgagttc
aaagaattccagagctcccttcaagctgtaccactaaagaatgaacagctaatgtattct
gacaccaacaagcccattcaacaagatacttcaactactttaaaatctcctcaagctgtt
cagtctactgcttgttttcaagacaacatagctactccagacgttcctcataacaaatca
acaccaaacatttctagcaaacgaaagccaagaaaactggctgtcaattttggtgcacca
aaatcttcagaataa
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integrated database retrieval system
