Lepidochelys kempii (Atlantic ridley): 140917394
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Entry
140917394 CDS
T11378
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140917394 (WDR33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkp03019
]
140917394 (WDR33)
Messenger RNA biogenesis [BR:
lkp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140917394 (WDR33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ASA1
Beta-prop_WDR90_POC16_2nd
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
CFAP251_N
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
eIF2A
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Collagen
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
140917394
NCBI-ProteinID:
XP_073216248
LinkDB
All DBs
Position
9:47123190..47229951
Genome browser
AA seq
1319 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPPELMNDRKEDIKLEEKKKTQAE
IEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQQQAPPPGGPLHGPQPFPGQGPMSQMPQ
GFQQPIPPQQMPMNMPQMGPPGPQGQFRPGGPQGQMGPQGPPLHQGSGGPQGFMGPQGPA
GPQGPPQGLPRPQDLHGHQGMQRHPGPHGPMGPQGPPGPPGNSGPQGHLGPQGPPGSQTH
LGPQGHLGPQGPPGGQGMQGPPGPRGMQGPPLPHGMQGGPGSQGMQGPISQGPLMGLNPR
GMQGPPGPRDNQGPAPQGMMMGHPQEMRGPHMQGGLLGHGPQEMRGLQGPPPQGSMLGPP
QELRGPPGAQGQQGPPKNSLVGPQGSMQGPSGPPGQQNPSRGSHPPQGPLPFQQQKTPLL
GDGPRVPFSQEGQNPGPPPLIPGLGQQGGQGRLAPHNQGPGPNKGDNRGPPNHHMGPLSE
RRHDQNSGGPDHGPERGPFRGGQEWGDGRDNRGLPDRRGPHPDFHDDFDRPDDFHPDKRF
GHRLREFEGRGGPLLQDEKWRRGGPGPPFPPDHRDFEGGGPNRGPPGPWEGRRPSDERYP
REPEDARFRGRRDESFRRGAPSRHEGRGPRGRDSFPGPEDFGPEDNFNSSDENSRGRDHG
GRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPESWDGNREPGSRQDHPPHDGQSPASRER
SSSLQGMDMASLPPRKRPWHDGPGTSDHREMEAPGAPPEERGKGRGNSGPSQRVPKSGRS
SSLEGDHHDGFHRDEGFGGPAGGSNPSRGGRSGSNWGRGSNMNSGQSRRGASRGGGRGR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggccacagaaattggctccccaccccggtttttccatatgccgaggttccagcatcag
gcacctcggcagctgttctacaagagacctgattttgcacagcagcaggcaatgcagcag
ctcacctttgatgggaaacggatgagaaaagctgtgaaccggaaaaccatagactataat
ccctctgtaattaaatatttggagaatagagtatggcagagagaccagcgagatatgcgg
gcaatccagcctgatgcaggatattataatgatctggtccctcctataggaatgctgaat
aaccctatgaatgctgtaacaacaaaatttgttaggacatctaccaataaagtaaaatgt
ccggtgtttgttgtcaggtggactcctgaagggaggcgcttggtcactggggcttctagt
ggagagttcaccttgtggaatggattgactttcaattttgaaacaatattacaggctcac
gacagccctgtaagggccatgacttggtcgcacaatgatatgtggatgctgacagcagac
cacgggggatatgtgaaatactggcagtccaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgacgacggcactgttagaatctgggactttctacgttgccatgaggagagaattctt
cgagggcatggggcagatgtgaagtgtgttgactggcatccaacaaagggattggttgtg
tcaggaagcaaagacagccaacagcctatcaagttttgggatccaaaaactggccagagt
cttgccacgctacatgctcataaaaacacagtgatggaggtaaagttgaacctgaatggg
aattggctgcttacagcatctcgtgaccatctctgcaagctctttgacatccgaaacctg
aaagaagagctccaagttttcaggggtcacaagaaagaggccacagctgtggcctggcac
cctgttcatgaagggctttttgccagtggagggtctgatggttctttgttgttctggcat
gttggggtggagaaagaggttggcggaatggaaatggcccatgagggaatgatctggagt
ctggcttggcatcctcttggacacattctctgctccggctcaaatgatcatactagcaaa
ttctggactcgaaatcggcctggagataaaatgagagatcgttacaacctgaacctgctg
ccaggaatgtcagaggatggcgtggaatatgatgaccttgaacccaacagccttgcagtg
attcctgggatgggaatacctgagcaactgaaactagccatggaacaagagcagatgggg
aaagatgagtcaaatgaaattgagatgacaatcccagggctggactggggaatggaggag
gtgatgcaaaaggaccaaaagaaagtgccacagaaaaaagtgccctatgcgaaaccaatc
ccagcacaatttcaacaggcttggatgcagaataaggtccctatccctgctccacctgag
ctgatgaatgacagaaaggaggatattaaactggaggagaaaaagaaaacacaagccgag
atcgagcaggaaatggcagcacttcagtacaccaaccctcagctcttggagcaactgaag
attgagagacttgcacaaaagcaagctgagcaagtccagcagcaggcaccacctccagga
ggccctctgcatggaccccagcctttcccaggacaaggcccaatgtcgcagatgcctcaa
ggatttcagcagcccattccacctcagcagatgccaatgaatatgcctcaaatgggaccc
cctggtccacagggacagttcagacctggaggaccccagggacaaatgggaccccaaggt
cctccattacatcaaggatctggaggtccacaaggcttcatgggaccacaaggacctgcg
ggtccccagggacctccacaaggactaccaaggcctcaggatctacatgggcatcaagga
atgcagagacatcctggacctcatgggcccatggggcctcaagggccaccaggtccaccg
ggtaattctggcccacagggtcacttaggaccacaaggtccacctgggtctcagactcat
ttagggccgcaaggtcacttaggtcctcaaggtccccctggtggtcaaggaatgcagggg
ccacctggtccaagaggaatgcaagggccgcctcttcctcatggaatgcaaggaggccca
ggatctcaagggatgcagggccctatatctcaagggcctttgatgggacttaatccaaga
gggatgcagggtccaccagggccccgtgataatcagggacctgctccacaagggatgatg
atgggtcatccgcaagaaatgagaggacctcacatgcagggtggtttactcggacatggt
ccccaggagatgaggggcctacagggacccccacctcaaggttcaatgttaggacctcca
caggaattacgtgggccgccaggtgcacaaggccagcaggggcctccaaagaactcttta
gttgggcctcaaggaagtatgcaaggaccgtcgggacctccgggacagcagaatccttca
agggggtcacatcctccccaaggccctctacctttccagcagcagaaaacccctctgctt
ggtgatgggcctcgtgtcccattcagtcaggaaggacagaacccaggtcccccaccattg
ataccaggactggggcagcagggaggacaaggccgtctcgcccctcacaaccaaggacct
ggtcctaataaaggtgacaaccgtggcccaccaaaccatcacatgggccctctctcagaa
agaaggcatgaccaaaacagtggtggtccagatcatggtcctgagagagggccattccga
ggtggccaggagtggggtgatggtagggacaacaggggcctgcctgatagacgaggacct
cacccagattttcatgatgattttgatcgaccagatgattttcatccagacaagcgattt
ggccaccggttgcgtgaatttgaggggcgaggtggcccactgctacaagatgagaaatgg
agacgaggtggcccagggcccccctttccccctgatcacagggactttgagggagggggt
ccaaatcgtggccctcctgggccttgggaaggacggagaccctctgatgagagatatcca
cgagaacctgaggatgcaagattccggggaagacgggatgaaagctttagaagaggagca
ccctcaagacatgaggggcggggacccaggggaagggatagttttcctggtccggaagac
tttgggccagaagataattttaactcgtcagatgagaactcaagaggaagagatcatggt
ggtcgggggcgaggtcgaggtactccaagaggaggccgaaagggtctacttcccactcca
gatgagtttccccgctttgaaggagggcggaaaccagaatcctgggatggaaacagagaa
ccaggttcccgtcaggatcaccctcctcatgatggacagtctcctgccagccgagagcgt
tcttcctcacttcagggtatggacatggcctcactgccaccacgcaaacgtccctggcac
gatggaccagggacatctgatcacagagaaatggaagctccaggtgcacctccagaggag
agaggcaaaggacgaggaaactcaggaccttcacagagagtgccaaagtctgggaggtct
agctctttggagggagaccatcatgatggattccacagagatgaaggttttggaggccct
gcaggaggcagtaacccttccagaggagggaggagtggaagtaattggggaagaggaagt
aacatgaactctggccagtcaaggcgaggagcatccaggggtggtggaaggggccgatag
DBGET
integrated database retrieval system
