Lepidochelys kempii (Atlantic ridley): 140918340
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Entry
140918340 CDS
T11378
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lkp01001
]
140918340 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lkp04054
]
140918340 (CIITA)
Enzymes [BR:
lkp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
140918340 (CIITA)
Protein kinases [BR:
lkp01001
]
Serine/threonine kinases: Other
TAF1 family
140918340 (CIITA)
Pattern recognition receptors [BR:
lkp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
140918340 (CIITA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140918340
NCBI-ProteinID:
XP_073218562
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Position
10:complement(23741892..23818859)
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AA seq
1281 aa
AA seq
DB search
MNLFKEILPEVREILSSATTSDVHALLSCMLEKDVISKEYHQTLLQEKDREDLARKISLT
LVEKWDLCLNTLVPLRCLKLYRKMPQDITDNESSLNRGIVASKRQTMDSAVLTENSFLDL
LHSNIDPLHLYSLLDTRLSNEDEESELSTDPEIDTINHDQFSNLDVFYTMESNGSVEESL
FSNTGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMSNETTEGFTEMKKQKCQKRPF
VSTAESYSDSSKLKCRRTDAAKRVKEGVCTEGSRAVVDVRTSCQKRVESPGSTVNGTFVA
VPLNSSPATSTSLSHLHMQFSVTSIQPTGKNVVMPVSSGNSNPDCLLVGAKGIQMISGFA
VHPQQIINLPVGNGASNIIIYPVSSSPTETLQISPVYPTTLAAQVDLAVQSILGSPDKNP
SMGPFAYMPETAAVTDHTDEEEMSNERSQIPVVPSEQILKRPKPVDAFCTSLKDYFQDVC
KFMAMDREVTLDHLYIDGALMQGQTETKSGKNIIKVMEKELVIYNLEEKEKAAIERSQIF
QVLGGKELETKVVVVLGKAGMGKSILVQKICQDWSNGKFSQFEFVFWFECRRLSLPEKQY
SLKDLLLELFVKPREGSDEVFEYILQNPDKVLLIFDGFEELQDHDGFTHYSDCQSYKELY
SIRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGFSPQQVESYIARYFE
GLPYSDDAVKLITDCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDLPSTLTSLFVKYLQQ
KLIPTQTDVTAIGNQQHITRLAQLAWYLGEKNQNALKSSLFPSKEVKEFALKYGLVLPFT
FPKHSGNREEEFGSVFSDFVIQNFLSALHLVLTEEIKDKSLTKYLSLPARKKKPHNWLDL
VPRFLPGLLYLQHDPYLCSLSDEHVMKIITKKQKTLLKYIKKIQISDLYPEKLLELLHCV
YETQDNYLLQHVALRLRAELSFLGTLLTPPDVYVLHFILKRSPKEFSLDLRNSGINLQGL
KHLVGLKSVTSFRASLSDTVRLWESLEQTKEYELLKISVEKFGIDPFKAETMKDISDLSD
LVRVQEKMIRCMEDAFGCNINEIPAIKNLRKLEFALGAACGLQGFLKLVEILAAFPSLQH
LDLDALSENEIGDEGTKSLCEVLSELTSLETLNLSQNKITDLGAEQLATALPSLSSLKTL
SLYNNYICDAGAENIARILPAMASLRVLHVQCNKITDAGAQKLTDSLRKCPHIKSVAMWN
PTIPYGVLEHLQQLDSRISLL
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctgaagtcagggaaattctctccagtgccacaacg
tctgatgtccatgcattgctcagctgcatgctggagaaagatgttatatccaaggaatac
catcagaccttactccaggaaaaagacagagaagacctagcaaggaagatatctctaacg
cttgtggaaaaatgggacttgtgtttgaacaccttagttcctctccgttgtttaaaactg
taccgtaagatgccacaagacatcacagataatgagtcatctctgaacaggggtatagtt
gctagtaaaagacaaacaatggattcggcagttttgactgaaaatagctttcttgatttg
ctgcacagcaatattgatccactgcatctatacagcctcttggacacaaggttatctaat
gaagatgaagaaagtgaactttcaacagaccctgaaattgataccatcaaccatgatcag
ttcagcaatttggatgtcttttatacaatggaaagcaatggaagtgtggaagaatctctc
ttttcaaatacaggggaagcttattctagaatagctggattagcagaatatgtgctcaaa
gatcagcaggagagacagatggaagacatttttggaaaactcattttggatgaaatgtcc
aatgaaaccacagagggttttacagagatgaagaagcagaaatgtcagaaacgaccattc
gtgagcactgcagagagttactctgattcttccaagctcaaatgcaggagaacggatgca
gcaaagagggtgaaggaaggagtatgtacagaaggcagcagagctgttgtggatgtaaga
actagttgccagaaaagagtggagtcccctgggtctacagtgaatggaacttttgtagcg
gtgcctctgaacagctctccagctacctccacctctttgtctcacctgcacatgcagttt
tctgttaccagtatacagccaaccggaaaaaatgttgtgatgcctgtgtcttctggaaat
tccaacccagactgtctgcttgttggtgctaaagggatccagatgatatccggctttgca
gttcatcctcagcagataattaatttgcctgtagggaatggtgcatccaatattataata
tatccagtgtcctcctcccccactgaaacattacagatatcaccagtttaccccacaacc
ctggctgctcaagtggacttggctgtccaaagcattttggggtctcctgacaaaaacccc
tccatgggcccatttgcttatatgccagagactgcagctgtgactgatcatacagatgaa
gaagaaatgtccaatgagagatcacagattcctgttgttccttctgaacaaattctcaaa
agaccaaagccagtggacgctttctgcacatcacttaaggattatttccaagatgtgtgc
aagttcatggccatggaccgtgaagtaacccttgatcacctttacattgatggggctctc
atgcaaggtcaaactgaaacaaagagtgggaagaatatcatcaaggtgatggagaaggag
ctggtaatatacaatttagaagagaaggaaaaagcagctatagaaagaagccaaatattt
caagtcctgggagggaaagaactggagacgaaagtcgttgtggtgttgggaaaggcagga
atgggtaaaagcattcttgttcaaaagatctgccaagactggtccaatggaaagttttct
cagtttgaatttgtcttttggtttgagtgtagacggctgagcctgcctgaaaagcaatac
agcttgaaggacctgcttcttgagctctttgtcaaacctcgagagggaagcgacgaagtc
ttcgagtacatactgcaaaatcccgataaagtcctcctcatctttgatggtttcgaagag
ttgcaggatcatgatggctttacacattactcagactgccagtcgtacaaggagctgtac
agcatcagagagctatttgcagggctcttccagaagaagatactcagtggctgtacttta
ttgctaacagcaagacccaaagacaaatttaatcagtatttatccaaagtggacaagatt
atcgaaatgatagggttctctccacaacaggtagaatcatatatagccagatattttgaa
gggctaccatacagtgatgatgcagtgaaattaatcacagattgtcaatatctgttcagt
cactgctacagccctgtcatgtgtagattcatttgttttctctgtgaaatgatgtttgaa
atgggagacaaagacctgccttcaacacttaccagcctctttgtaaaataccttcagcaa
aagctgatacctacacaaacagatgtgacagccataggaaatcaacagcacattaccagg
ctagctcagttagcctggtatcttggagaaaagaatcaaaatgccctgaagagcagtctt
tttccctctaaagaagttaaggagtttgctctgaaatatggcttggtactgccatttaca
ttcccaaaacattcgggaaacagggaggaagaatttgggagtgtgttctcagattttgtt
atccaaaattttttgagtgcacttcatctggtgctcacagaagagatcaaggataaaagc
ctcacaaagtacctctcactaccagccaggaagaaaaagcctcataattggttagacttg
gtgcctcgattcttgcctgggttattgtatctccagcatgatccatacctctgttctctt
tcagatgagcatgtaatgaaaatcataaccaagaagcagaagacactcttaaaatatatt
aaaaaaatacagataagtgatctctatccagaaaaactacttgagctgctccactgtgtt
tatgaaacacaggacaactatcttttgcagcatgtggctttaaggctcagggctgaactt
tcttttctgggcactcttcttacaccccctgatgtctatgtgctgcattttattttaaaa
agatccccaaaggagttttccttggatttgaggaacagtggtattaacctacaagggctg
aaacacctggttggcctaaagagtgtgacatcatttagggcctcccttagtgatacagtc
aggctgtgggagtccttagagcaaacaaaagaatatgagctgctgaagatttcagttgag
aaatttggtattgatccctttaaggcagaaactatgaaggacatcagtgacctgtctgac
cttgtacgggtacaagagaaaatgatccgctgcatggaagatgcatttggctgcaatatt
aatgaaattcctgctatcaaaaacctcagaaaactagaatttgcgctgggtgcagcctgc
ggccttcagggattcttaaagcttgttgaaattcttgcagcattcccatctcttcagcat
ttagacttggatgctctgagtgaaaatgaaataggagatgaaggaacaaaaagcctctgt
gaagtattgtctgagctgacatcactggaaacattgaatttatcacagaacaagataaca
gatttgggggcagagcaactagccactgctcttccttccttatcctcgttaaagacactg
agtttgtacaataactacatttgtgatgctggagcggaaaatattgcaagaatacttcct
gcaatggcatctttaagggtgttacatgttcagtgtaacaagataactgatgccggagcc
cagaagctgactgatagcctcagaaaatgcccccacatcaagagtgtggcgatgtggaat
cctactattccctatggagttcttgagcatcttcaacagctagattctagaatcagtttg
ctgtag
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