Apilactobacillus kunkeei: APS55_01235
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Entry
APS55_01235 CDS
T04112
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lku
Apilactobacillus kunkeei
Pathway
lku03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APS55_01235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lku03400
]
APS55_01235
Enzymes [BR:
lku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APS55_01235
DNA repair and recombination proteins [BR:
lku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
APS55_01235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_16
UB2H
CdvA
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ALJ32092
UniProt:
A0AAC8WD22
LinkDB
All DBs
Position
complement(219004..222504)
Genome browser
AA seq
1166 aa
AA seq
DB search
MPQYDEIVNDLAPKHRQLVTGLSGSAKTMMIAALFNSTKKNFLIVTDTLSRCDDIVEDLQ
NVVSEDDVLEFPVEEVLAAEVATSSPEYKATRVQALSKLLSDEPKIIVTSVSGTKRILPE
PGDFSDANLTISIDDEVNLDELRNKLFQMGYTPEKMVAAPGEFSLRGSIIDIYPLNSEYP
VRIDLFDTDVDSLRYFDVSNQRSLENIETISVLPATDMVLNEAQRQQAVANLTQLRDKRL
AKLDNDELKQRLSDAVSTMIDDANEGIIDPDWIMYAKAMYENETTIFDYLDDDGVVLFDD
YSRILENSQQLVEEEQSWANDKFDHGEIASTDLFSVDFREHFHKINQAEILMSLFQKGIG
NLKLTQLNDIKVRPMQKFFGQMPLLKTEIDRWHKQDDTVVILVKDKARMQKVSQTLTDFE
IESVQTTSDNILEHQVQVVSERLKNGFELPIKQLAVITESEMFTTVHKKRPRRQTFSNAE
RIKSYADLKPGDYVVHANHGIGKYEGMKTMEVDGKHQDYMTIAYQKNAKLFIPVTQLNLI
QKYVSSEDKHPRVNKLGGSEWQKTKSKVQGKIEDIADDLIDLYAKRSNQVGYAFPEDDEY
QEEFEGAFPYQPTPDQVKSSEEIKKDMEQPHPMDRLLVGDVGYGKTEVALHAAFKAVEAG
KQVAFLVPTTVLAQQHYETMVNRFEGFPVSVAVLSRFRTKKQVEETKKGLLDGSIDIVVG
THRLLSDDIKFADLGLLMVDEEQRFGVKHKEKIKQLKSNVDVLTLTATPIPRTLNMSMMG
VRDLSVIETPPANRYPIQTYLMEENAGAIREGITREMHRGGQVFFMHNRVSDIEDTVMKL
QTLVPDARIAYIHGQMTENQLETILYDFVNGEYDVLVTTTIIETGVDIPNANTLFVEDAD
HMGLSQLYQIRGRIGRSNRVAYAYFMYKPNKVLTEVSENRLEAIRDFTELGSGFKIAMRD
LSLRGAGNLLGKQQSGFVDSVGYDMYTQMLADAVATKRGRRAEQRVDTTVEMDIEAYLPS
EYIQDEKQKIELYKRIRQMQNDDQYRELQSDLIDRFGDYPTAVENLLTISRIKMYADSSL
IEKIRQTPKQITVTLSTIGTQFYDSKQVLKAIAQTEFRSMVGTANNKMQITLIIQPNMDE
QKWLGELSKFVEALDKEHTGSLTNEK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ctgccacaatatgatgagattgttaatgatttagcacccaaacatcgtcagttagtgact
ggtttatcaggttctgcgaagacaatgatgattgctgctttgttcaattcaacaaagaaa
aacttcttgattgttactgatactttatccagatgtgatgatattgttgaagatttacaa
aatgttgtctccgaagatgatgtattagaatttccagtcgaagaagtcttagccgcagaa
gttgccaccagttcacctgaatacaaggccactcgtgtgcaagctttatcaaagctatta
agcgatgaacctaagattatcgtaacgtctgtttccggtaccaaacgtattttgccggaa
cctggagatttttctgatgctaatttaaccatctcgatcgacgatgaagttaatttagat
gaattaagaaacaaactatttcaaatgggctacacacctgaaaagatggtggcagcacca
ggtgaattttcacttcgtggatcaattatcgatatttatccattgaactcagaatatcca
gttcgaattgatttattcgatactgatgtcgattcattgagatattttgacgtatctaat
caaagaagtttggaaaatattgaaaccatctcagtactaccagcgactgatatggtatta
aacgaagcacaaagacaacaagcagttgctaatttaacacaactacgtgataaacgttta
gccaaactggataacgacgaactaaagcaacgcctaagtgatgctgtttcaaccatgatt
gatgatgccaatgaaggaatcattgatccagattggataatgtatgctaaggcaatgtat
gaaaacgaaacgaccatctttgactatctggatgatgatggtgtcgttttattcgatgac
tacagtcgtatcttagaaaacagccaacaactagtcgaagaagaacaatcatgggctaat
gataagtttgaccatggtgaaattgcatccaccgatttatttagcgtggactttagagaa
cacttccacaaaattaatcaggcagaaattttaatgtcattgttccaaaaggggattggg
aaccttaagttaacccaattaaatgatattaaggttcgtccaatgcaaaagttcttcggt
caaatgccattattgaagactgaaattgatagatggcacaaacaagatgataccgttgtg
attttggtgaaggacaaggccagaatgcaaaaggtatcgcaaacattgactgactttgaa
atcgaatccgttcaaaccaccagtgacaacattttagaacatcaagtccaagtggtcagt
gaacgcttgaagaatgggtttgaattgccaatcaaacaattggcggtaattaccgaatca
gaaatgtttacgaccgtccacaagaaacgaccacgtcgtcaaacattttctaacgcggaa
cgaatcaagagctatgctgatttaaaaccgggcgactatgtcgttcatgctaaccacggg
attggtaagtatgaagggatgaagaccatggaagtcgatggtaagcaccaagactacatg
accattgcttaccaaaagaatgccaagttattcattccggttactcaattaaacttgatt
caaaagtacgtttcatccgaagacaaacacccacgtgttaacaagttgggtggaagtgaa
tggcaaaagacgaagtcaaaggttcaaggaaagattgaagatattgccgatgacctaatt
gacttatacgctaaacgttccaaccaggtaggatacgcctttccagaagatgacgagtac
caagaagaatttgagggggcattcccataccaaccaacacctgaccaggtgaagagttct
gaagaaattaaaaaggatatggaacaaccacatccaatggatcgtttactagttggggat
gttggttacggtaagaccgaagtagcattgcacgctgcctttaaggcggtcgaagcaggt
aaacaggtggcatttttggtaccaactaccgtgttggcacaacaacactacgaaacaatg
gtgaaccgttttgaaggtttcccagtttcagtagcagtgctatctcgttttagaaccaag
aagcaggttgaagaaaccaaaaaaggtttactagatggatcaatcgacatcgttgttggt
actcatcgtttgctatctgatgacatcaagttcgccgacttaggattattgatggtcgat
gaagaacaacgctttggtgttaaacacaaggaaaagattaagcaattaaaatctaatgtt
gatgttttgacactaacagcaaccccaattccaagaactttgaacatgtccatgatggga
gttcgtgacctttcagttattgaaactccaccagcaaaccgttacccaattcaaacgtac
ttaatggaagaaaatgcaggagcaattcgtgagggaatcacccgtgaaatgcatcgtggt
ggccaagtcttcttcatgcataatcgtgtttcagacattgaagacaccgtcatgaagcta
caaacattggttccagatgctagaattgcttacattcacggtcaaatgaccgaaaaccaa
ttggaaactattctctatgattttgttaacggtgaatacgacgtgttagtaaccacaaca
atcatcgaaactggggtcgacattccaaacgccaatacgttgtttgtcgaagatgccgat
cacatgggactatcccagttgtatcaaattcgtggacgaatcggtcgttctaaccgtgtc
gcttatgcgtactttatgtataaaccaaacaaagtgttgaccgaagtttcagaaaaccgt
ttggaagctatcagggactttaccgaactgggttctggtttcaagattgccatgcgtgac
ttatcacttcgtggtgccgggaacctattaggtaagcaacaatcaggattcgtcgattcg
gttggttatgatatgtatactcaaatgttagccgatgccgttgcaactaagcgtggtcgt
cgtgccgaacaacgagttgatacaaccgtcgaaatggacattgaagcatacttgcctagc
gaatatattcaagatgaaaaacaaaagatcgaattatacaagcgaattagacaaatgcaa
aacgacgatcaatatcgtgaactacagtctgatttaattgaccgtttcggtgattatcca
actgcggttgaaaacctattaacaatcagtcgcatcaagatgtatgccgactcatcgtta
attgaaaagattaggcaaacaccaaaacaaattacagtcactctatcaacgattggaact
caattctatgacagcaagcaagtgctaaaggcaattgcgcaaacagagtttagatcaatg
gttggtactgctaacaacaagatgcaaattaccttaatcattcaacctaatatggatgaa
caaaagtggttaggtgaattgagtaagtttgtcgaagcattagataaagaacatacagga
agcttaacaaatgaaaaatga
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