Apilactobacillus kunkeei: APS55_04835
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Entry
APS55_04835 CDS
T04112
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lku
Apilactobacillus kunkeei
Pathway
lku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APS55_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lku03021
]
APS55_04835
03400 DNA repair and recombination proteins [BR:
lku03400
]
APS55_04835
Enzymes [BR:
lku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APS55_04835
Transcription machinery [BR:
lku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APS55_04835
DNA repair and recombination proteins [BR:
lku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APS55_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Inhibitor_I24
Motif
Other DBs
NCBI-ProteinID:
ALJ31589
UniProt:
A0AAC8ZYV1
LinkDB
All DBs
Position
1071233..1074895
Genome browser
AA seq
1220 aa
AA seq
DB search
MVDVNKFSSMQIGLASSDKIRSWSFGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTDPGDTPLENKQLISEQDYREKKLEYGNRFEAKIGAEAIRTLLN
NVDINKEVAELKDELKKATGQKRVRAVRRLDILEAFLQSGNDLSWMVMEAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKFNQMGLPVP
MAMELFKPFIMKELVKRGSASNIKSAKRQIERKDEEVFDVLDDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKSMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAESRLLMLAATHIL
APRDGNPIVAPSQDMVIGNYYLTMEEEGREGEGMIFNTPEEARLSYQSGLTHWHTRVGIA
ASSMSEKPFTDEQKDKILVTTIGKIIFNGILPKTFQYLNEPTDTNLHGHLSDSFFLEPGE
DIHEHLKNAPLNGAFKKGFLSDIIAEVYKQYKVTETSQLLDRMKDLGYNESTKSGLTVGI
TDVTDLKSKPQIIADSHKKVENVTKQFRRGLITDQERYERVIGIWSDAKDEIQNDLLKNF
DPQNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGEIMELPITANFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCNTDRGVIVAALKQGNEMIEPLY
DRIIGRYAMKTVKNPETGEVIVKHNQMINEPEAEAIEAAGIEEVEIRSAFTCNTVHGVCE
KCYGRNLATGSPVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRVQEI
FEARNPKGKAEITEVTGTVSLIEENPAERVKEVTVKGDADTRTYKVPINARMNVAEGDFI
RRGQAINEGSIDPKELIKVRDSLSTEVYLLSEVQKTYRMQGVEVSDKHAEIMVRQMLRKV
RIMDSGDTEVLPGTLMDINDFKEANADAVISGKIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKLIPAGTGMKTYGEINAKVEEQESPKVDSN
DVYSISQIEKRMNEEDVNNQ
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaacaaattttcaagcatgcaaattggattagcttcttctgataaaatt
cgtagttggtcatttggtgaagttaaaaagccagaaactatcaactacagaactttaaaa
ccagaaaaagatggtctattcgacgaaagaattttcggtcctacaaaggattgggaatgt
gcttgtggtaaatataaacgtattagatacaagggtatcgtctgtgatcgttgtggagta
gaagttacacgtgctaaagtacgtcgtgaacgtatgggtcacattgaattagctgctcca
gtaactcacatttggtacttcaaaggaattccaagtcgtatgggtcttgtattagacatg
agcccacgtgctttggaagaaattatctactttgcttcatacgttgttacagatcctggt
gatactccactagaaaacaagcaactaatctcagaacaagattaccgtgaaaagaaactt
gaatacggtaaccgttttgaagctaagattggtgctgaagcaattagaactttattgaac
aatgttgatatcaataaagaagttgctgaactaaaagatgaactaaagaaggctactggt
caaaagcgtgttagagcggttagacgtctagatattctagaagccttcctacaatcaggt
aatgacttgtcatggatggtaatggaagcaattccagttattccacctgacttaagacca
atggtacaactagaaggtggccgtttcgccacttctgacttaaatgacttgtaccgtcgt
gttattaacagaaataaccgtctaaagagattattagatctacatgctcctggtatcatc
gttcaaaacgaaaaacgtatgctacaagaagctgttgatgctttaatcgataatggtcgt
cgtggtcgtcctgttgccggtcctggtaaccgtccacttaagtcactatcacacatgctt
aaaggtaagcaaggtcgtttcagacaaaacttacttggtaagcgtgttgactactctggt
cgttctgttattgatgttggaccattcttgaagttcaaccaaatgggacttccagttcca
atggccatggaattattcaagcctttcattatgaaagaacttgtaaaacgtggtagtgct
tcgaacattaagtctgctaaacgtcaaatcgaacgtaaagatgaagaagtattcgatgta
ttggatgacgtaattaaggaacatccagtattacttaaccgtgcacctacattgcataga
ttaggtattcaagcattcgaaccagtattggtttcaggtaaatcaatgcgtcttcaccca
ttagcttgtgaagcttacaacgccgattttgatggtgaccaaatggccatccacgttcct
ttatcagacgaagcacaagctgaatcaagactattgatgctagctgctactcatattctt
gcccctcgtgatggaaacccaatcgttgctccttctcaagatatggttattggtaactac
tacctaactatggaagaagaaggccgtgaaggtgaaggtatgatcttcaacacacctgaa
gaagcaagactttcataccaaagtggtttaactcactggcatactcgtgttggtattgcc
gcttcatcaatgagtgaaaaaccattcactgacgaacaaaaggacaagattttggtaaca
actattggtaagattatcttcaacggtattcttccaaagacattccaatacttgaacgaa
ccaactgatactaacctacatggtcacttatctgacagtttcttcctagaacctggtgaa
gatatccatgaacacttgaagaatgctcctctaaacggtgccttcaagaaaggtttctta
tcagacatcattgctgaagtttacaagcaatacaaggtaactgaaacttcacaactacta
gatagaatgaaggacttaggttacaacgaatcaactaagtcaggtttaactgttggtatc
actgacgttactgaccttaagtcaaaacctcaaattattgctgattcacacaaaaaagtt
gaaaacgttacaaaacaattccgtcgtggtttaattactgaccaagaacgttacgaaaga
gttatcggtatctggagtgatgctaaggatgaaattcaaaacgacttgttgaagaacttt
gatcctcaaaaccctatctttatgatgagtgactctggtgcccgtggtaacatctctaac
tttactcaattagctggtatgcgtggtttgatggccgcacctaatggtgaaatcatggaa
ctacctatcactgctaacttccgtgaaggtctatcagttcttgaaatgtttatttctacc
cacggtgcccgtaagggtatgactgatactgccttgaagactgccaactcaggttactta
actcgtcgtctagttgatgtggctcaagacgttattatcagagaagaagattgtaacact
gaccgtggagttatcgttgctgcattgaagcaaggtaacgaaatgattgaacctctatac
gacagaatcattggtagatatgctatgaagacagttaagaacccagaaactggtgaagta
attgttaagcataaccaaatgattaacgaacctgaagctgaagcaattgaagctgctgga
attgaagaagttgaaattcgttcagcattcacttgtaacacagttcacggggtttgtgaa
aaatgttacggtcgtaacttagctactggttcacctgtagaagttggtgaagcagttggt
actgttgctgctcaatcaattggtgaacctggtactcaattaactatgcgtaacttccat
accggtggggttgctggtaacgccgatatcacacaaggtcttcctcgtgttcaagaaatc
ttcgaagctagaaaccctaaaggtaaagcagaaattactgaagttacaggtactgtatct
ctaattgaagaaaaccctgctgaaagagtgaaggaagttactgttaaaggtgacgccgac
actagaacttacaaggttccaattaatgctcgtatgaacgtggctgaaggtgacttcatc
cgtcgtggacaagctattaacgaaggttcaattgatcctaaggaactaatcaaggttcgt
gactcactatcaactgaagtatacttgctaagtgaagttcaaaagacttaccgtatgcaa
ggggtagaagttagtgataagcatgccgaaatcatggttcgtcaaatgctacgtaaggta
agaatcatggactcaggtgacactgaagttctaccgggtactttaatggatattaacgac
tttaaggaagctaatgctgacgcagttatttctggtaagattccagcaactgcacgtcca
gttatcttaggtattactaaggctgccctagaaactaacagtttcttatcagctgcatca
ttccaagaaactactcgtgttctaacagatgctgctatccgtggaaagaacgatccatta
gttggtcttaaggaaaatgttattattggtaagctaattccagctggtactggaatgaag
acttacggtgaaatcaacgctaaagttgaagaacaagaatcaccaaaagttgattcaaac
gacgtttactcaattagccaaattgaaaaacgtatgaatgaagaagacgtaaataaccaa
taa
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