Apilactobacillus kunkeei: APS55_06180
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Entry
APS55_06180 CDS
T04112
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lku
Apilactobacillus kunkeei
Pathway
lku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APS55_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lku03019
]
APS55_06180
03400 DNA repair and recombination proteins [BR:
lku03400
]
APS55_06180
Enzymes [BR:
lku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APS55_06180
Messenger RNA biogenesis [BR:
lku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APS55_06180
DNA repair and recombination proteins [BR:
lku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APS55_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_22
Putative_PNPOx_2
Helicase_C_2
HEM4
FF
Motif
Other DBs
NCBI-ProteinID:
ALJ31817
UniProt:
A0AAC8ZZG3
LinkDB
All DBs
Position
1326681..1328123
Genome browser
AA seq
480 aa
AA seq
DB search
MLSDEALKKHLKKWFGFNDFRSGQKEVIQSILDGKDTLGVLPTGTGKTLIYQYVGKMVDG
MVIVVSPLISLMQDQVDRMRYLGEKQTVAITSNLSWVDRKRVIKNLNNYKYVYVSPEMLS
NSDILDAFKQHKISLFVVDEAHCINQWGPDFRPEYLNLKDIIISLNHPTTLMLTATASND
VVLDIKEKIGLPNVETIKYSTNRPNIALAVDTFTSNEDKNNQLLYLVNKLMKPGIIYFSS
KKVANAVCEWLKEKTNLNVEVYHADLDADSRYRIQHQFISDQIDIICATSAFGMGIDKDN
IRFVIHYHMPANLESYVQEMGRAGRDGKQSISVILYKEKDEVLQYRFIDDTIPSEDMINF
FYNHYQQLKNNELDEKADLINYYFQSGFTKNGVINIFEGRRNELVTSLNQMLGYVKTKGC
KRAFLLRYFNENFSEHDENCCNGDGTQLQLEQMDLVQESKSLNSRSRNIKWQSIIQTLFF
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgttaagtgatgaagcattaaagaaacatctaaagaaatggtttggctttaatgacttt
cgttctggtcaaaaagaggttattcaatcaatcttggatggtaaagacacgttaggtgtt
ttgccaactggtactggtaagacacttatttatcaatacgttggtaagatggtcgatggg
atggtaatcgtggtatcaccgttaatttctttgatgcaagatcaagttgatagaatgaga
tacttgggtgaaaagcaaacggtggcgataacatctaatctttcttgggtagatcgaaaa
agagtcatcaagaatttaaataactacaagtatgtttatgtttcaccagaaatgttatct
aattcggatatattagatgcttttaagcagcacaaaatatcactgtttgtggtagatgag
gctcattgtattaaccaatggggaccggactttagacctgaatatctcaatttaaaggat
ataatcattagtttaaatcacccaactacattaatgttgactgcgactgcttctaatgat
gtcgttttagacattaaagaaaaaattggcttgccaaacgtagaaacgataaagtattcg
acaaatcgacctaacattgcattagcagttgatacatttactagtaatgaagataaaaat
aatcagctgctttacctagtcaataaattgatgaagccagggattatttacttctctagt
aagaaggttgccaacgcggtttgcgagtggctaaaagagaaaaccaatttaaatgttgag
gtttatcatgcagatttagatgctgatagtcgatatcggattcaacatcagtttattagt
gaccaaattgatatcatttgtgccacaagtgcatttggaatgggaatcgataaggataac
atcagatttgttattcattaccacatgcccgctaatttggaatcatacgtccaagagatg
ggaagagctggtagggatggtaaacaaagtatctcagttatcttgtataaagaaaaagac
gaagttttacaatatcgatttatcgatgacacgattcccagtgaagatatgattaacttc
ttttataatcattatcaacaactaaaaaataatgaattggacgaaaaagctgatctcatt
aactattattttcaaagtggttttacgaaaaacggagtaattaatatatttgagggaaga
agaaatgaattagtaacatccttaaaccaaatgttaggttatgtgaaaacaaagggatgt
aagcgagcgtttttacttagatactttaacgaaaatttttctgaacatgatgaaaattgt
tgtaatggggatgggacccaactacaattagaacagatggatttagttcaagaaagcaag
agcctgaattcgcggtcacgaaacatcaaatggcaaagtattattcaaactctttttttc
taa
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