Apilactobacillus kunkeei: APS55_06960
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Entry
APS55_06960 CDS
T04112
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lku
Apilactobacillus kunkeei
Pathway
lku03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
APS55_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lku03400
]
APS55_06960
Enzymes [BR:
lku01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
APS55_06960
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
APS55_06960
DNA repair and recombination proteins [BR:
lku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
APS55_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ALJ31966
UniProt:
A0AAC9EZZ1
LinkDB
All DBs
Position
complement(1476277..1477110)
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVETVRRGLTNLVESAKVKTIDVLYPKMINVSAKEFKDTLEGHTINRIDRRGKYL
LFRFDNKMTLVSHLRMEGKYDVEPDGTEPTKHTHIIFHMDDDRELRYKDSRKFGRMYLVK
NGDEKTLSGIGTIGPEPTDETLTFDYMKSIMNKARGKIKPFLLNQSNIAGLGNIYCDEVL
WLTKIHPETQTNLITDEEIEELRKNIIAEIKMAIKGHGTTVHSYSNAYGEAGSFQNHLHV
YGRKGEPCERCDTLLEKIKVAQRGTTFCPNCQRKVVE
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagtagaaactgttagaagaggtcttactaacttagtggaaagt
gctaaggtgaagacaattgatgtattatatcccaaaatgattaatgttagtgcaaaggaa
ttcaaggatactctagaaggccacactattaatcgtattgatcgtcgtggtaaataccta
ctattcagatttgataacaaaatgactttggtatcacatctaagaatggaaggtaagtat
gacgtagaacctgatggaactgaaccaactaaacatactcatattattttccatatggat
gatgaccgtgaactaagatacaaagatagtcgtaagttcggtcgtatgtacttagttaaa
aatggtgacgaaaagactctttctggtataggaacaattggtcctgaaccaactgatgaa
actctaacatttgattacatgaaatcaatcatgaacaaggctagaggaaagattaaacca
ttcttactaaaccaaagcaatattgctggattaggtaatatttactgtgacgaagtttta
tggttgaccaagattcaccctgaaactcaaactaacttaattactgatgaagaaattgaa
gaattaagaaagaacattattgcagaaataaaaatggcaattaagggacatggaactact
gttcactcttattcaaatgcatatggagaagctggatcattccaaaaccatctacatgtg
tatggtagaaaaggtgaaccttgtgaacgttgcgataccttattagaaaagattaaggtg
gctcaacgaggcacaacattctgtcctaactgtcaaagaaaagtggttgaataa
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