Lactococcus lactis subsp. lactis Il1403: L0263
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Entry
L0263 CDS
T00045
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lla
Lactococcus lactis subsp. lactis Il1403
Pathway
lla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0263 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lla03400
]
L0263 (mfd)
Enzymes [BR:
lla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0263 (mfd)
DNA repair and recombination proteins [BR:
lla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L0263 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
Cas3-like_C_2
AAA_7
UB2H
RecG_dom3_C
AAA_30
Sulfotransfer_4
Motif
Other DBs
NCBI-ProteinID:
AAK04111
UniProt:
Q9CJI0
LinkDB
All DBs
Position
17165..20650
Genome browser
AA seq
1161 aa
AA seq
DB search
MNIIEFFDQNWQLQKWQQGFSKRERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFH
ANELYDELSTLLGEEKVFQFFSDDNIYAEFALASKDRVAYRLEALNFLLDEKSTGFLVVP
FLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIV
DIYPLDAENPVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTDKEFDKGAK
SLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKTSLLNYFPKNVQIFI
DDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTYLLDTMAKVRNYKPATFFSNFQKGL
GNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQEFTVVLAVSSEKLRKSLHELDLSL
QEVDRESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEHEIFGKMRKKKARKLNITNAERLK
DYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGDTISVPVDHLDLLSKY
TAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFAFSPDDTSQEE
FDSGFSYVETEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQV
AVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHR
LLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQLEEL
IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHAKLGTSKQKRTSNVEISLELDAFIPAYY
ISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGEYPDEVAYLLEIGLLKPFADNVLVE
KIEKSRFEATVTLEKVANTTYDPQDYFKALAKTSMKASVGEKYGKMTFRFKIENRNSVVL
LSEIMNFIEELSKIRDSYENK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaatattattgaattttttgaccaaaattggcaactacaaaaatggcaacaaggtttt
tcaaagcgtgagcgaactttactgacaggattgtcaggaacagcaaagagcttagtgatg
gcaaatgcttatgaaaatgttgctgacaaatatattattgttactgacagccagtttcat
gcgaatgaactttatgatgaactgtcaactttgcttggtgaagaaaaagtttttcaattt
ttttctgacgataacatctacgcagagttcgcacttgcatctaaagatcgagttgcttat
cgacttgaggcacttaatttcctacttgacgaaaagtcaacaggatttttggtcgtacct
tttttggcattacggagctatttaccaagtcccgaaaattttttagaaaattatctttta
ctgacctctggggatgagtatgatttatcaaatttagttaatttattatcaaaagctggt
tatgaaaagacacagcgcgtgatgacgccaggtgaattttcaatgcgaggagatatcgtt
gatatttatcctttagatgcggaaaatccggtacgtttagagttttttggtgatgaagta
gatacgattcgctcatttgatgtggagagtcaacgttcactgacaagccttgaacgtttg
gaaatatatccggccagtgattttattttgactgacaaagaatttgacaagggtgcaaaa
tcactgacagaaatgacaaatttactgacagacccgtcagcaaaatcatatatggaagaa
gtgatttcagcagctcaaaatcactattatcacaaagatttacgaaaatttgcggagtat
ttttatgataaaaaaacttcacttttaaattattttccaaaaaatgttcaaatattcatt
gatgattttcaaaaagtaaatgaaatgaataataagttagaaatggaattagcagatttc
attttatctgaaaaagcaatggaaagaggatttgaagggcagacttatttgctagataca
atggcaaaagttagaaattataagcctgctaccttcttttcaaatttccaaaaagggctc
ggaaatctcagatttgaacaactttataatttcaaacaacattcaatgcaacaatttttc
ggtcaattagaacttttttacactgaagttgaacgatttattaagcaagagtttacagtt
gttttagctgtatcatcagaaaaactccgtaaatcactccatgaattagatttaagttta
caagaggttgacagagaatctattcaagtgggtaaagtcaatctgattgatttgcaatta
tccaatggttttaatttccttgatgaaaaattagtcgtcatgactgagcatgaaatattt
ggtaaaatgcgtaagaaaaaggcacgcaaactgaatattacaaatgcagaaagactaaaa
gattacaatgaactcgctgttggtgattttgttgtccataagaatcatgggattgggaaa
tatttaggtttacaaacgcttgaagtcggcggaatgcatcgtgattatctgaccattcaa
tatcaaaatggggatacaatttctgttccagttgatcacctagatttactcagtaaatat
acagctggggaaggaaaaagtcctaaaatcaataaactgaacgatgggcgttggcgtaaa
accatgtcttctgtcagtaaacaagttgaagatatttcagatgatttgattaaactttat
gctgaacgtcaggcgaaaaaaggatttgcattctcgccggatgacaccagtcaagaagaa
tttgattctggtttttcatatgttgaaactgaagaccagatgcgttcaatcaatgaaatt
aagcatgatatggaacttgaacggccaatggaccgcttgttagttggtgatgttggtttt
ggtaaaaccgaagttgcaatgcgagcagccttcaaagccataaatgacgggaaacaagtc
gcagttcttgtgccaacgactgttcttgctgagcagcattttaataattttactgaacgt
tttatcaactttggtgtaaatgtcgaagttctcagccgttttcaaacgaaaacacagcaa
actgaaattctagccaaattgaaaaaaggacgagttgatttaattattggaacccaccgt
ttactttcaaaagatgttgaattttttgatttaggtttgatgattattgatgaagaacaa
cgttttggagttaagcataaagaacgtttgaaagaattaaaaacccaggttgatgttttg
acattgacagccacacctattcctaggactctacatatgtcaatgcttggaattcgtgac
ttgtcagttattgaaacaccaccaacaaaccgttatccagttcaaacctatgtcatggaa
acaaactacggtgtggttcgtgatgcagtgttgagagaaatctctcgtggtggacaagtt
tactatgtttacaatagggttgacacgattgagcaaaaagtttctcaattagaagaatta
attcctgaagcaagaattggttttatacacggccaaatgactgaagtacaacttgaaaat
actttacttgcctttatcgcaggtgattatgatgtgcttgttgcaacgacaatcattgaa
actggggttgatattccaaatgcgaatacgctttttattgaaaatgcggatatgatgggc
ttgtcacaactttatcaattaagagggcgagtggggcgttcaaatcgggtagcttacgcc
tatttcatgtatcgacctgaaaaaatattgtctgaagtttcggaaaaacgtttggaagct
atcaaaggctttacagaattaggctcaggtttcaagattgccatgcgtgatttgtctatc
cgtggtgctggtaatttactgggaagtgagcaatcaggatttattgattctgttggtttc
gatttgtactcacaactgttggaagaagccattcacgctaaacttgggacaagtaagcaa
aaacggacttcaaatgtggaaatttctttggaattggatgcctttattcctgcttattat
atttctgatgaacgtcaaaaaattgaaatttacaaacgaattcgtcaaattgatagtcgg
gagatttatgaagaactacaagaagaattggttgaccgttttggagaatatccagatgaa
gtcgcttatcttctggaaattggtctcttaaaaccctttgcagataacgtcttagttgaa
aaaattgaaaaatcgagatttgaagcaactgttactttggaaaaagtggctaataccacc
tatgacccacaagattatttcaaagccttggctaaaacaagcatgaaagcttctgtgggg
gaaaaatatggtaaaatgactttccgctttaaaattgaaaatcgaaactccgttgttctt
ttgagcgaaataatgaattttattgaagaattatcaaaaatacgagacagttacgaaaac
aagtaa
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