Lysinibacillus louembei: R6U77_04415
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Entry
R6U77_04415 CDS
T09574
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llb
Lysinibacillus louembei
Pathway
llb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R6U77_04415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llb03400
]
R6U77_04415 (mfd)
Enzymes [BR:
llb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R6U77_04415 (mfd)
DNA repair and recombination proteins [BR:
llb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R6U77_04415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
NERD
RecG_dom3_C
MFD_D3
AAA_22
IstB_IS21
UB2H
DUF3638
UBA
Motif
Other DBs
NCBI-ProteinID:
WPK12942
LinkDB
All DBs
Position
complement(907990..911511)
Genome browser
AA seq
1173 aa
AA seq
DB search
MEVFHQLFSQDKHINAFLQQVTKDRQASQLVTGLTGGARPALLQAVYLETGRPLYVLAPN
LLQAQKLVDDLTALVGEEEVHYYPAEEFIAAGMSVASPELRAQRITTLDYLVNHKRGIYI
IPVAGMRKMMTPMNIWQSHILHTAVGEEIVIEEWLNQLVTMGYSRSQMVTTPGEFAVRGG
ILDIYPLDAEAPVRIELFDTEVDSIRTFSADDQRSIDKLSSVRILPAAELLLNAEQRVQL
AVRLEEALANSLKKVKKQEIQELLYQYIQQDIALLKDGNLPDTVAKYGSLLFEQQTFLGD
YFAQDGIVFWDELGRIQEVADAWEREETEWFLSLIEEGKMLHDVKPSFTLKEIDAMLTLP
NYYFALFTRTFSGFKFNKTVNFSCKPMQQFHGQIALLQSELGRWQQEKYTILFAAEGKER
LAAIQRTLEDYQIHAQLGLGQGAGIYLIDVALTNGFELPLQKIAVVTDDELFKQQTRKRA
RSQKMSNAERIKSYSEIQPGDYVVHVHHGVGKYIGIETLVVGGQHKDYLHIRYRADDKLY
VSVDQIDLVQKFVGSEDKEPKLHKLGGPEWKKAKAKVASAVQDIADDLIKLYAKREAEKG
FAFSPDSDDIRAFEDLFPYEETEDQLRTIIEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHFETMQQRFEEQAINVGLLSRFRTKKQQTETIKGLR
NGTVDMVIGTHRMLSKDVVYNDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQTFYLYNRVE
DMARRVEEIQMLVPEARIGFAHGRMTESELEATILEFLEGEYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDLYSQMLEEAIVERQTGVKKEEKPDVEI
ILHTEAYIPDAYIPDGYQKIQMYKRIKAMEHVEDYVEIIDEMQDRFGDVPTETVRLLRIA
RMKVWALAAGVESIKEKQGVISIHLSEQGTAQVDGGKIVSESMKYERATGFSMDGVKLTI
TIDSKRCNKHLPFDVLEGMMQIIAEAIKEPVEQ
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaagtttttcatcaattattctcgcaagataagcatataaatgcatttttacagcaa
gtaacgaaggaccgtcaagcaagccaattagtaacaggcttaacaggtggcgctaggcca
gcattgttacaagccgtttatttagaaacagggcgaccgttgtatgtgttagcgccaaac
ttattgcaagcacaaaaactagtggatgatttaacagcacttgttggagaggaggaggtg
cactattacccagccgaggagtttattgcagcagggatgtctgtagcatccccagagctt
cgagcacagcgaattacgacacttgactatttagttaatcataagcgtggcatttatatt
attcctgttgcaggtatgcgcaaaatgatgacgccaatgaatatatggcagtcacatata
ttgcatacagcagtcggcgaggaaattgtcattgaggaatggctgaatcagcttgtgaca
atggggtatagtcgcagtcaaatggtgacaacaccaggcgaatttgcagtgcgtggagga
attttagatatttatccgctcgatgcagaggcaccagttcgtatcgagttatttgataca
gaggtagactcaattcgaacattttcagcagatgaccagcgctcaattgataagctgagc
agtgtacgcattctaccagcagcagaattgctgttaaatgcagagcagcgcgtacagctc
gcagttcgtttagaggaagcgctagcaaatagcttaaaaaaagtaaaaaagcaggaaatt
caagagctgctttaccaatatattcaacaagatattgcgttattgaaggatggaaatttg
cctgatactgtcgcaaagtatggctcattattgtttgagcagcaaacatttttaggtgat
tattttgcacaggatggtatcgtcttttgggatgagcttgggcgcattcaagaagtagca
gatgcatgggagcgcgaggagacggaatggtttttatcgttaattgaagagggcaaaatg
ctgcatgatgtaaagccatcgttcacattaaaagaaattgatgcgatgctcacattacca
aactattattttgcgttattcacaagaacgttttcaggcttcaagtttaataaaacagtg
aacttttcttgtaagccgatgcagcagtttcatgggcaaattgctttgctgcaatcagag
cttgggcgttggcagcaggagaaatatactattttatttgcagcagaaggcaaagagcgt
cttgcagcgattcagcgtacattggaagactatcaaattcatgcacagctaggattaggg
caaggagcaggcatttatttaattgatgtcgcattaacgaatggctttgagctaccactt
caaaaaatagcggttgtaacagatgacgagctatttaagcagcagacaagaaaacgagca
cgctcacaaaaaatgtccaatgcagagcgcattaaaagctactcggaaattcagcctggc
gattatgttgtgcatgtgcatcacggtgtagggaaatatatcggtattgagacactcgtt
gttggtggtcagcataaagattatttgcatattcgctacagagcagacgataagctctat
gtatctgttgaccaaatcgacttagtgcaaaaatttgttgggtcagaggacaaggagccg
aagctacataagctaggtggaccagaatggaaaaaggcaaaggcgaaggtggcttctgcg
gtacaggatattgcagatgatttaattaagctttatgcaaaacgtgaggcagagaagggc
tttgctttctctcctgattcagatgacatacgtgcatttgaggatttattcccttatgag
gaaacagaggaccagctgcgcacaattattgaagtgaagcgcgatatggagcgtgagcga
ccgatggaccgtcttgtttgtggtgacgttggctacggtaaaacggaggtagcgattcgt
gcggcatttaaagcgattcaggatggcaagcaggttgcctttttagtgccaacaacgatt
ttggcacagcagcattttgaaacgatgcagcagcgcttcgaagagcaagctattaatgtt
ggcttattaagccgtttccgcacgaaaaagcagcaaacggaaacaataaagggcttgcgc
aatggaacagttgatatggtaattggcacacatcgcatgttatcaaaggatgttgtttat
aacgatttaggattgctgattgtggatgaagagcagcgctttggtgtaacgcacaaagaa
aaaattaagcagctcaaaacaaatgtcgatgtgctgacattaacagctacgccgattcca
cgtacattgcatatgtcgatggttggtgtgcgagatttatctgttattgaaacaccacca
caaaaccgcttccctgtgcaaacatatgttatggagcataacggagcgcttgtgcgtgag
gcaattgagcgagaaatggcgcgcggtgggcaaacgttttatttatataatcgtgtagag
gatatggctcgccgtgttgaggaaattcaaatgctagtgccagaagcacgtatcggcttt
gcacatggtagaatgacagaatcagagctagaggcgacgattttggagtttttagagggg
gaatacgatgtgcttgttacaacaacaattattgaaacaggtgtcgatattccaaatgtt
aatacattaattgtgcatgatgccgatcgtatggggctgtcacagctttatcaattgcgt
ggacgtgttggacgctcaaatcgtgtcgcatatgcttatttcatgtatcagcgcgacaaa
gtgctgacagatgtggcagagcagcgcttacaggcgattaaagaatttactgaattgggc
tcaggctttaaaattgcgatgcgcgatttatcaattcgtggagcaggaaacttattaggt
gcacagcagcacggcttcattgatgcagtcggctttgacttatattcacaaatgttagag
gaggcaattgtcgagcgtcaaacaggtgtgaaaaaggaagagaagccagacgtcgaaatt
attttgcatacagaggcatatattcctgatgcttatattccagatggctatcaaaaaatt
caaatgtataagcgtattaaagcgatggagcatgtcgaggattatgtagaaattattgat
gaaatgcaggatcgcttcggtgatgtaccaacagaaacggtgcgcttactacgcattgcg
cgcatgaaggtatgggctttagcagcaggcgttgagtcaattaaagaaaagcagggcgtg
atttccattcatttatcagagcaaggtacagcgcaagtagatggtggaaaaattgtttct
gaatcaatgaaatacgagcgcgcaacaggcttcagcatggatggcgtgaagctgacaata
acaatcgacagcaagcgctgtaacaagcatttgccatttgatgtattagaaggcatgatg
caaattattgccgaggcaataaaagagcctgtggagcagtga
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integrated database retrieval system
