Lysinibacillus louembei: R6U77_06785
Help
Entry
R6U77_06785 CDS
T09574
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
llb
Lysinibacillus louembei
Brite
KEGG Orthology (KO) [BR:
llb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
llb03016
]
R6U77_06785
Enzymes [BR:
llb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R6U77_06785
Transfer RNA biogenesis [BR:
llb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R6U77_06785
Prokaryotic type
tRNA splicing ligases
R6U77_06785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Tli3
DUF7210
Motif
Other DBs
NCBI-ProteinID:
WPK13375
UniProt:
A0ABZ0S103
LinkDB
All DBs
Position
1360277..1361497
Genome browser
AA seq
406 aa
AA seq
DB search
MIEVNGRFTKAKIYTNTAQPAAIEQIRELTDQAFMEGTKIRIMPDYHAGKGCVIGTTIQL
RERVVPNLVGVDVGCGVFVAEVDATVIDYAKLDATIRAYVPSGQDLHTELSPARQFEEFT
CQNFIATGMRDDYTNLSLGTLGGGNHFIELAKDEEGKYYLLIHTGSRYVGAKVANWHQKR
AFEMLRHQDVAAIIERLKVDGREQEIQSAIEAYKAQNPVIPKDLAYLEGQYFDDYIHDMK
IAQRYAVINRWTIAETIAQHMEWTYTDTFDTIHNYIDTDTMTLRKGAVRANEGEKLVIPM
NMRDGSLICIGKGNAEWNYSAPHGAGRVYSRRMAKKELTMDAFKETMQGIWTTSVTEDTL
DEAPMAYKPMKEITSVIGETVDIIKAIKPVYNFKASEEHKPYMRKK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
gtgattgaagtaaatggccgctttacaaaggcaaaaatctatacgaatacagcgcagcct
gctgctattgagcaaattcgtgagctaacagaccaagcttttatggaagggacaaaaatt
cgtattatgccagattatcatgctggtaaaggctgtgtgattggcacaacgattcagctg
agggagcgtgtcgtaccgaatcttgttggtgttgatgtaggctgtggtgttttcgtagcg
gaggtggatgccactgttattgattatgctaagctagatgcaacgattcgggcgtatgta
ccaagcggacaggatttgcatacagagctatctcctgcacgtcagtttgaggaatttaca
tgtcaaaactttattgccacagggatgagagatgattatacgaatttatcgcttggcaca
ttaggtggtggcaatcattttatcgagcttgccaaagatgaggaagggaaatattattta
ttaattcatacaggctctcgctatgtcggtgcaaaggtagcaaattggcatcaaaaaaga
gcttttgagatgttacgtcatcaagatgtagcagcgattattgaaaggttaaaagtggat
gggcgtgagcaggagattcaaagtgcaattgaagcgtacaaggcacaaaaccctgttatt
ccaaaggacttagcttatttagaagggcagtattttgatgattatattcatgacatgaaa
attgcgcagcgctatgcggttattaatcgttggacgattgctgaaacgattgcacagcat
atggaatggacatatacagataccttcgatacaattcataactatattgatacagatacg
atgacattacgcaaaggggctgtacgtgcgaatgaaggagaaaagcttgtcattccgatg
aatatgcgtgatggctcattaatttgtattgggaaaggcaatgcagaatggaattattca
gcaccgcatggggcaggtcgagtttattcacgtcgcatggcaaaaaaagagctgacgatg
gatgccttcaaagaaacgatgcaaggtatttggacgacatccgttacagaggatacgctt
gatgaagcaccaatggcttataagccgatgaaggaaattacatcggtaattggtgagacg
gtcgatattataaaagcgattaagcctgtttataattttaaagcgagtgaggagcataag
ccttatatgagaaagaaatag
DBGET
integrated database retrieval system
