Lysinibacillus louembei: R6U77_07655
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Entry
R6U77_07655 CDS
T09574
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
llb
Lysinibacillus louembei
Pathway
llb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R6U77_07655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llb03019
]
R6U77_07655
03009 Ribosome biogenesis [BR:
llb03009
]
R6U77_07655
Enzymes [BR:
llb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R6U77_07655
Messenger RNA biogenesis [BR:
llb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R6U77_07655
Ribosome biogenesis [BR:
llb03009
]
Prokaryotic type
rRNA helicases
R6U77_07655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
NDK
RAM
Motif
Other DBs
NCBI-ProteinID:
WPK13544
LinkDB
All DBs
Position
1545002..1546522
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AA seq
506 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIKFALEGRDILGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSNRQTLL
FSATMPPAIRKIAETFMQEPEIVKIKAKELTVDNIEQFFVKAQEREKFDILCRVINVHQP
ELAIIFGRTKRRVDELTQALNLRGYNAEGIHGDLSQAKRISVLRQFKENQIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGIAITFVTPREMSYLRIVEETTK
KRMTPLKPPTTSEALVGQQQQSVENLVELVQSAELSDYRLLAEELLESYNAVDLIAAALK
SVTREPDATPVTITEERPLPMRRERGSHQGRSGGGRNDRNRRNDRGGNRDRGRGGDRNRT
SSSSSDRNRDRRREGSGSRRPRRRED
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagtgaatctacattacgctcagtaaagcgcatg
ggatttgaagaagcaacaccaatccaagaaggtacaattaaatttgcattagaaggccgc
gatatacttggtcaagcgcaaacaggtactggtaaaactgccgcattcggtattcctcta
attgagaaaattgaccctaaaaatccaaacatccaagcattagttattgctccaactcgt
gaattagcaattcaagtttcggaagagctttataaaatcggatatgacaagcgtgtgaag
ttattgtctgtttacggtggtcaagaaattggacgccaaattcgcgcattgaaaaataga
ccacaaattatcgttggtacaccaggtcgtattattgaccatattaatcgtcgcacgtta
aagcttgaagatgtacaaacattagttttagacgaagcggatgaaatgttaaacatgggc
ttcattgatgatattaattcaattttagaaaatgtaccatcaaatcgccaaacattattg
ttctcagcaacaatgcctccagcaattcgtaaaattgcagaaacatttatgcaagagcca
gaaatcgttaaaattaaagcaaaagaattaacggtggataatattgagcaatttttcgta
aaagcgcaggagcgtgaaaaattcgatattttatgccgcgtaattaacgtacatcaacca
gaattagcgattatcttcggtcgtacaaaacgccgtgtagatgagctaacacaagcatta
aatttacgtggttataatgcagaaggtattcatggtgatttaagccaagcgaaacgtatt
tctgtattgcgtcaatttaaagaaaaccaaatcgacattcttgtagcaacagacgttgca
gcacgtggacttgatatttcaggtgtaacacatgtttacaatttcgatattccacaagac
ccagaaagctatgtacaccgtattggtcgtacaggtcgtgctggtaaatcaggtattgca
ataacatttgtaacaccacgtgaaatgagctacttgcgtatcgtggaagaaacaacgaaa
aaacgtatgacgccattaaagccacctacaacaagcgaagcattagtaggtcaacaacag
caatctgtggagaacttagtggagctagtacaatctgctgagcttagcgattaccgttta
ttagcagaagagctattggaaagctataatgcagttgacttaatcgctgctgcattaaaa
tcagttacacgtgagccagatgcaacgcctgtaacaattacagaagagcgtccattaccg
atgcgtcgtgagcgcggctcgcatcaaggccgtagcggcggtggtcgcaatgaccgaaat
cgtcgtaacgatcgtggtggtaatcgtgatcgtggacgtggtggtgaccgtaaccgcaca
tcatcgtcatcatcagatcgaaatcgtgaccgtcgtcgtgaaggtagcggaagccgacgc
ccacgccgtcgcgaagactaa
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