Lactococcus lactis subsp. cremoris SK11: LACR_0324
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Entry
LACR_0324 CDS
T00420
Name
(GenBank) RNase J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
llc
Lactococcus lactis subsp. cremoris SK11
Pathway
llc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACR_0324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llc03019
]
LACR_0324
Messenger RNA biogenesis [BR:
llc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LACR_0324
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABJ71932
UniProt:
Q032E0
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All DBs
Position
complement(294757..296442)
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AA seq
561 aa
AA seq
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MPKQLKIKADEVAVYAIGGLGEIGKNTYGVEYKDEIIIIDAGIKFPEDDLLGVDYVIPDY
TYIVENIDRIKGLFITHGHEDHIGGIPFLLKQANIPIYAGPLSLALIRGKLEEHGLLRDA
KLYEIHADSVIKFNHLSLDFFRTTHSIPEPLGIVVNTPQGKIVATGDFKFDFTPVGEPAD
LHRMAELGSEGVLLLLSDSTNAEIPTFSHSEKVVGASIMKIFERIEGRIIFASFASNIFR
LQQAVDGAVKTGRKIVVFGRSMEKAIVNGLELGYIKAPKGTFIEPNEVNQYASHELLIMC
TGSQGEPMAALSRIANGMHRHITLQMGDTVVFSSNAIPGNTHGVNQLINKIAEAGVEVIY
GKMNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMLKIHAGLAQDTGVPKENCFIQE
NGDVLALTADSARYADHFPAADTYVDGSGIGDVGNAVLHDRHELSEDGIVLAVATVDFKK
KTVLAGPDMLSRGFIYMRESGDLIRSGQRVLFNAIREAMHEENANEASVARAMREALSPF
LYKQTERSPLVVPMIMTPDEK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaacttaaaataaaagctgatgaagtcgcagtttacgccattggcggactg
ggcgaaatcggtaaaaacacttatggcgttgaatataaagatgaaatcatcatcatcgac
gccggaattaaattcccagaagacgatttattaggtgttgactacgtcatccctgattac
acttatattgttgaaaatatcgaccggattaaagggctcttcattactcacggacacgaa
gaccatatcggaggaattcctttccttttgaaacaagccaatatccctatttatgctggg
ccattgtcacttgcactcatccgtggaaagctcgaagaacacgggcttttacgtgatgct
aaactctacgaaatccacgccgattcagtcattaaatttaatcacttgagtcttgatttc
ttccgcaccactcactcaattccagaacctttaggaattgttgtaaatacccctcaaggt
aaaattgtagcgaccggtgacttcaagtttgacttcacaccagtgggtgaacctgctgat
ctacatcggatggctgaacttggtagcgaaggtgtcttactccttctttctgattcaacc
aatgctgaaattccaactttttcacattctgaaaaagtcgttggtgcaagcatcatgaaa
atttttgaacgtattgaaggtcggattattttcgcttcttttgcctcaaatattttccgt
ttgcaacaagccgttgatggagcagttaagactgggcgtaaaatcgttgtctttggtcgt
tcaatggaaaaagccattgttaacggtttagaacttggttatatcaaagcgcctaagggc
acatttatcgaaccaaatgaagtcaatcaatatgcttcacatgaacttttgattatgtgt
acaggttcgcaaggcgaaccaatggctgcactttcaagaattgccaatggcatgcaccgt
catattaccctacaaatgggcgataccgttgtcttctcatcaaatgcgattcctggaaat
actcatggtgttaaccaattgattaacaaaatcgctgaagctggagttgaagtcatttat
ggtaagatgaacaacattcacacttcaggtcacggtggacaacaagaacaaaaactcatg
ttgcgtcttatcaaaccaaaatactttatgcctgtccacggtgagtatcgtatgctcaaa
attcatgctggacttgctcaagatactggtgtccctaaagaaaattgtttcattcaagaa
aacggagatgtccttgcactgactgctgacagcgccagatatgctgaccatttcccggct
gccgatacttatgttgacggttcaggaattggagatgtcggaaatgccgttctccatgac
cgtcatgaactttcagaagacggaatcgttcttgcagtggcaaccgttgactttaaaaag
aaaaccgttcttgctggacctgatatgctctcacgtggattcatttacatgcgtgagtct
ggtgatttgattcgtagtggccaacgtgtccttttcaatgctatacgtgaagccatgcat
gaagaaaatgctaatgaagcgtctgtagcacgtgcgatgcgtgaagcactctcaccattc
ctttataaacaaactgagcgctcaccacttgttgttccaatgattatgacacctgatgaa
aaataa
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