Lactococcus lactis subsp. cremoris SK11: LACR_0571
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Entry
LACR_0571 CDS
T00420
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
llc
Lactococcus lactis subsp. cremoris SK11
Pathway
llc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
llc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LACR_0571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llc03021
]
LACR_0571
Transcription machinery [BR:
llc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LACR_0571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
IF2_N
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
ABJ72146
UniProt:
Q031H6
LinkDB
All DBs
Position
526643..527986
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AA seq
447 aa
AA seq
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MAANKKRISQISKETGVQNRVLVEKAQEIGLLVKSHSSSVGPGEERRLLEALNVKPVVVE
KMDSPKTLARVEIKENGDTFNVKAYEKAVKGYITKRKPLGEALDEEIMDELSVKFGIVDD
ALEDLFKQIQDAGISIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVRMYL
KEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDL
IQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLI
RVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIE
DDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTR
ERIRQIEAKAIKKLRHPRRSKPLRDFM
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcaaataaaaaaagaataagtcaaatttcgaaagaaacaggagttcaaaaccgt
gtcttggttgagaaagcccaagaaattggcttacttgtaaaatcacattcaagttcagtt
ggacctggtgaggaacgtcgtcttcttgaagcattaaatgttaaacctgttgttgttgaa
aagatggatagtcctaaaacattagcgagagttgaaatcaaagaaaatggtgatactttt
aatgtaaaagcttatgaaaaagcagttaaaggctatattaccaaacgtaaacctttgggt
gaagcgcttgatgaagaaatcatggatgagctttctgttaaatttggaattgtggatgat
gctcttgaagatttgttcaaacaaattcaagatgcaggaatttcaattgtggataaagat
ggaaatccaagtcctttggctcttgtaactgatgaaattgaaaaagaagaagtttcagat
actgcaatggatgaaatcgttacgaatgttcgtattgatgatcctgttcgtatgtatctt
aaagaaattggtcgttatccattgatttctcttgatgaagaaacgaaacttgctgaagca
attattgctggtggtgaaggggcagaatttgcgaaacaaatgcttgccgaagccaacttg
cgtttggttgtttcaattgcaaaacgttattctggacgtggaatgcaatttttggatctg
attcaagaaggaaatatgggcttgatgaaagctgtggataagtttgaccacacgaaagga
ttcaagttctctacttatgccacttggtggattcgccaagcgattacacgtgcaattgct
gaccaagcccgcacgattcgtattccagtgcatatggttgaaacaatcaataaattgatt
cgtgttcaacgtaatcttttgcaagaactcggacgcgacccttcacctgaagaaattggt
aaagagttgcacatggcgccagataaagttcgtgaagttctgaaaattgctcaagaacca
gtatcactcgaaacgcctattggtgaagaagatgattctcatcttggtgacttcattgag
gatgatgtcatcgaatcacctgttgattatacaaaccgtattcttttacgtgaacagtta
gatgaagtgatggatactttgactgaccgtgaagaaaatgttttgagaatgcgatttggt
cttgatgatggacggatgcatactttggaagatgttggaaaacaattcaaagtgactcgt
gaacgtattcgtcaaattgaagcaaaagcaatcaaaaaacttcgtcacccacgtcgttct
aaaccattgcgtgactttatgtaa
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