Lactococcus lactis subsp. lactis KLDS 4.0325: P620_05435
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Entry
P620_05435 CDS
T02882
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lld
Lactococcus lactis subsp. lactis KLDS 4.0325
Pathway
lld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P620_05435 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lld03019
]
P620_05435 (rnr)
03016 Transfer RNA biogenesis [BR:
lld03016
]
P620_05435 (rnr)
Enzymes [BR:
lld01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P620_05435 (rnr)
Messenger RNA biogenesis [BR:
lld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P620_05435 (rnr)
Transfer RNA biogenesis [BR:
lld03016
]
Prokaryotic type
tRNA degradation factors
P620_05435 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RIP_P131-like
Motif
Other DBs
NCBI-ProteinID:
AGY44098
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Position
1004838..1007291
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AA seq
817 aa
AA seq
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MSIREVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLNFTAKGKV
ELAEKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNAN
ALKGTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEG
LIPENKAIVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEV
LDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIAD
VSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISP
EGRVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMR
KRRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPF
IYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLL
RSMQQARYSENNQGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGEGKTPANILQKWED
KIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFIELENTI
EGLVHISTLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEIDFEYLPSE
LDLIDKAAKAKKKPDHKGRKKSNQSLKVKSVAPKSTDKSANKSKNGRRADEKSEFDKKKK
KSAKKPFYSKAAKGKFTDKKDNGKKFTDGRKKPHKRG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagtattagagaagtaatcatggactatcttgagaatagttcaaaaaaagcactgtca
gtagaagaattgtcagttgcgttacatatgaataaggctaaagattacaaagtatttgtc
aaaactttagcttcactagaagccgagcatttgcttaattttactgcaaaaggtaaagtt
gaactagccgaaaaagaagaggcaaaagttgtcatcagcggaattttccgggccaatgca
gctggctttggttttgtcagcattgatgctgaagaaccagacgtttttgtcgcaagaggc
caaacggctttcgcccttgatggtgacgaagtttttattgaaattgataaaaatgccaat
gcgctcaaaggaacttctgctgaagggcatgttgtcgaaatcattcgccatgacgtccat
caggttgttggaacttttgtagctttgaatgatgatgaaaaagagcaaacaggactgatt
ggttttgttaaatctcggaataaaaaaatcccttatcgtgtttatttagaaaatgaaggt
ttaattcctgaaaataaagcgattgttcgtgttgaaatcactcattatccagataaggaa
tttccacagacaatgcaaggattagtcactgaaattattggtcaagcagatgaccaagga
attgacgttttggaagttttggcttcaatggatattgtttctgaatttccaaaagaagtt
ttagaccaagctgaagctgttccagaagaagttccagaaaatgaaattgtgggacgagtc
gattatcgtaatgaaatcacttttacaattgatggagcagacgcaaaagaccttgatgat
gctgtgcatgctaaacgtttggaaaatggaaactatgaattaggagtacatattgcggat
gtttcacactacgtcactgaaaattctccattagataaagaagcttacgaacgtggaaca
tctgtttatgtgacggatcgagtagttccaatgctgcccgaacgtctctctaatggaatt
tgttcattgaatcctcgaatcaatcgtctaacgcagtcttgtgtcatggaaattagtcct
gaaggtcgagtgatcaactatcaaatttctcaatcaattattaaaacgacagaaagaatg
acttatgatgccgttaatcaaatgattgcaggagatgaggcagcacttgaaaactatgct
aaaattgcagattctgtaaaaataatggttgaacttcaccatattttagaagccatgcgt
aaaagacgcggggccattgattttgatacagtagaagcgaaaatcattgtcaatgaaaaa
ggactgccaattgaaattagaaaacgaacacgtggcattgctgagcgaatgattgaatca
ttcatgcttgaagcgaatgaaacagttgcgacacatttcgaagcgcatggcctgcctttt
atctatcggattcacgaacaaccaaaagctgatagattgcaacgttttattgattttgca
gcaacttttggaatgcagattgaaggaacttcaaatggtattgatcagaaggttttacaa
gctttcatgaagaaaattaaaggtcagcctggcgaaatggtcttgtcaactatgttgtta
cggagtatgcagcaagctcgttattcagaaaacaatcagggtcactttggtttagctgcg
gaaaattatacgcactttacttcaccaattcgtcgttatcccgatttgttggttcatcga
ttgattcgtgaaattggtgagggaaaaacaccagctaatattttacaaaaatgggaagat
aaaattcctgaaattgcagaacattctagtcatcgtgaacgccgggcggttgatgctgaa
cgtgaagttgaaaaaatgaaaaaagccgaattcatggaagaacatgtgggtgaagagtat
gaagggattattgcttcagttacccgttttggaatgtttattgaacttgaaaatacgatt
gaaggtttagttcatatttcaacccttaaaggtgattattttaattatcaagaacgaatg
ttggcgcttattggcgaacgaagtggacttacctttaaaattggtcagcctattaaaata
aaagttgtcaaagctgatagaatgactggggagattgattttgaatatctaccttcagaa
ttagatttgattgataaagcagcgaaagcgaagaaaaaacctgatcataaaggtcgcaaa
aaatcaaatcaatctcttaaggttaaatcagtagcgccaaaatctactgacaaatctgct
aataaatcaaaaaatggcagaagagctgacgagaaatctgaatttgataaaaagaaaaag
aaatcagccaagaaaccattttacagtaaagctgctaagggcaaatttactgacaaaaaa
gataatggcaaaaaatttactgacggaagaaaaaagccacataaaagaggctaa
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