Legionella lansingensis: 44548918_00874
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Entry
44548918_00874 CDS
T05543
Symbol
rtcB
Name
(GenBank) replication factor C subunit (activator I)
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
llg
Legionella lansingensis
Brite
KEGG Orthology (KO) [BR:
llg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
llg03016
]
44548918_00874 (rtcB)
Enzymes [BR:
llg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
44548918_00874 (rtcB)
Transfer RNA biogenesis [BR:
llg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
44548918_00874 (rtcB)
Prokaryotic type
tRNA splicing ligases
44548918_00874 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SNV49154
LinkDB
All DBs
Position
1:complement(934904..936319)
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AA seq
471 aa
AA seq
DB search
MDMTQIKQLDEYRWAPKEKQDSVILYGTRELIEAMDEKVREQIINVASLPGLVGHAMTMP
DAHWGYGFPIGGVAAFDANQGGIISAGGVGFDISCGIRCLRTNLFHSDILPYLAELAEKL
FENVPSGVGSVGKIRLSTAELDDVMSGGALWALDRGYGIHEDLEYIEEKGCIAKASPKDV
SEHAKQRQLREMGTLGSGNHYLEIQLVKQIYDKQAAEAFGLVEDQILIAIHCGSRGLGHQ
IGSDYLISLAKAAQKLNLHLPDRELACAPILSPEGQQYLGAMRAGINCALANRQIIAHLT
REAVTSVLPNAQLETLFDVSHNTCKLEKHTVNGKEKEIYIHRKGATRAFGPKHPAVPHRY
KEVGQPVCIGGSMGTGSFILAGNSTNDAFASACHGAGRQMSRRQALKHWQGRALVDKLRS
EGIYIRSHSMRGIAEEAPGAYKDVHQVVEATELAGLARRVAFLKPLACVKG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggatatgacacaaatcaaacaacttgatgaatatcgttgggctccaaaagagaaacaa
gattcagtcatcctgtatggtactcgagagctcattgaagccatggatgaaaaagtacga
gagcaaatcattaatgtagccagtctacccggattggttggtcatgcaatgacaatgccg
gacgcgcactggggttatggttttcctattggtggggtggccgcttttgatgctaatcaa
ggtggcattatctctgccggaggtgttggttttgatatttcctgtggcattcgctgtttg
cgtaccaatcttttccattccgatatcttgccttatctggcagaactcgcagaaaagcta
ttcgaaaatgttccttcaggagtcggttcggttgggaaaatacgtttatccacggctgag
ctcgatgatgtcatgtctggtggagctctgtgggcattggacagaggttatgggatccat
gaagatttagaatatatcgaagaaaaaggttgcatagcaaaagcttccccaaaggatgtc
tctgagcatgccaaacaacgtcaattacgagaaatgggcacgcttggttctggaaatcat
tatctagaaatccaactcgttaaacaaatttatgataaacaagcagcagaagcattcgga
cttgttgaggatcaaattttaattgcaattcactgtggttctcgtgggcttgggcatcaa
attggctcagattatcttatatcacttgctaaagcggcacaaaaattaaatctccattta
ccggatagagaacttgcttgtgcgcctattctttcacctgaaggccagcaatacctgggg
gccatgcgtgcgggaatcaactgtgcgctggcgaatcgacaaattattgcccatttaaca
cgtgaagccgtaacaagtgtacttcctaatgctcaacttgaaaccttattcgatgtttcc
cataacacatgtaagctggaaaagcatacagtgaatggaaaagaaaaagaaatttacatt
caccgcaagggagcaacacgtgccttcggacctaaacatcctgctgtaccccaccgatac
aaagaggttggtcaacctgtttgtatcggtggaagtatgggaacaggttcgttcatactg
gcgggaaactccaccaatgatgcatttgcttcagcttgccatggagcaggccgacagatg
agccgaaggcaagcattaaaacactggcaaggaagagccttagtcgacaaattaagaagt
gagggcatttatatccgtagtcattccatgcgtggtatagccgaggaagcccctggggct
tataaagacgtccatcaggttgttgaagcaaccgaattggcaggattagcacgccgagtt
gcttttttgaagcccttagcttgcgtgaagggataa
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