Lacipirellula limnantheis: I41_00110
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Entry
I41_00110 CDS
T09857
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
llh
Lacipirellula limnantheis
Pathway
llh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I41_00110 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llh03019
]
I41_00110 (rhlE)
Enzymes [BR:
llh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I41_00110 (rhlE)
Messenger RNA biogenesis [BR:
llh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I41_00110 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UTP25_NTPase-like
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
QDT70858
UniProt:
A0A517TR68
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All DBs
Position
13000..14670
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AA seq
556 aa
AA seq
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MKFETLNIGPALLRAVADKGYEIMTPIQADAIPTILEGRDLIGCAQTGTGKTAAFALPTI
HRILSSLQAERDATAKANGQPTGQPEAAEAPADARDDRHQGNRADRRAGRHQTSRRPQAR
RKTRCLVLAPTRELVSQIAASFVAYGKHTALRQAVIYGGVGQGPQVKALQHGADVIIATP
GRLLDLMNQGHVDLSKIEILILDEADQMLDMGFIPDLKRIIAKVPTERQTLMFSATMPPA
IRELAHEWLKFPVSVQTTPVATPAEKVDQSVYFVAKDGKIRLLEQWLQNTANSRTIVFSR
TKHGADKIVKYLSQCKIRAAAIHGNKSQNFRERTLEQFKSSRPPVLVATDIAARGLDIKE
VSHVVNYDLPETPETYVHRIGRTGRAGAEGSAVSFCTAEEIKYLRGIERLTRRRIEVGQG
HDEYTLAAPPAAVDEPRQQRGRRGGPGGGGNRGGRPGGRPGGRPVGNGGGNSNGAGNGGY
AGNGTSGGRPTTGGGRRRPTTGGRPAPSARPKRRTDGKPADSAPIMLDGPAPADGKPPAT
GSGRRPKRRKKVTSRL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgaaacgttgaacatcggccccgcgctgctccgtgcggtcgccgacaagggt
tacgagatcatgacgccgatccaggccgacgcgatcccgacaatcctcgaaggacgcgac
ctgattggttgcgcccaaaccggcaccggcaagaccgccgcgttcgccctcccgacgatc
caccggatcctcagctcgctgcaagccgagcgcgacgcgacggccaaggccaacggtcaa
ccgaccggccagccggaagcggccgaagcgcccgccgacgcgcgcgacgatcgccaccaa
ggcaaccgcgcggatcgccgcgccggccgtcaccagacgtctcgtcgaccgcaagctcgt
cgcaagacgcggtgcctggtgctggccccgacgcgtgaactggtttcgcagatcgcggcc
agcttcgtcgcctacggcaagcacaccgcgctgcggcaagcagtgatctacggcggcgtc
ggccagggtccgcaagtgaaggccctgcaacatggcgccgacgtgatcatcgccacgccg
ggccggttgctggatctgatgaaccaggggcacgttgatctcagcaagatcgagattctg
attctcgacgaggcggatcaaatgctcgacatgggctttattcccgatctgaagcgaatc
atcgcgaaggtgccgacggagcgtcagacgctgatgttctcggcgacgatgcccccggcg
atccgcgaactggcccatgagtggttgaagttcccggtgagcgtccaaaccactccggtc
gccaccccggcggaaaaggtcgatcagtcggtttacttcgtcgcgaaagacggcaagatt
cgcctcctggagcagtggctgcagaacacggccaacagccgcacgatcgtcttctcgcgc
accaagcacggggccgacaagatcgtgaagtacctcagccaatgcaagattcgtgcggcg
gcgatccacggcaacaagagccagaacttccgcgagcggacgctcgagcaattcaagtcg
agtcgcccgcccgtcctggtggcgaccgacattgcggctcgcggcctcgacatcaaagaa
gtttcgcacgtcgtgaactacgacctacccgagacgcccgagacgtacgtccaccgcatc
ggccgcacgggccgcgcgggggccgagggctcggcggtgtcgttctgcacggcggaagag
atcaagtacctgcgcgggatcgaacgcttgacgcggcgtcgcatcgaagtcggccaaggg
cacgacgagtacacccttgcagcccccccggctgccgtcgacgaaccgcgtcaacaacgc
ggtcgtcgcggcggaccaggcggtggcggcaatcgtggcggtcgtcccggcggccggcca
ggtggacgtcccgtcggtaacggcggcggcaacagcaacggtgctggtaacggcggatat
gctggtaatggaacgagcggcggtcgccctactacgggcggcggacgtcgtcggccaaca
actggcggtcgcccggcgccgtcggctcggcccaagcgtcgcaccgacggcaagcctgcc
gatagcgcgccgatcatgctcgacggccccgctcccgccgacggcaagccgccggcgacc
ggcagcggccgccgtcccaagcggcgcaagaaggtcacgtcccggctgtaa
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