Lacipirellula limnantheis: I41_20260
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Entry
I41_20260 CDS
T09857
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
llh
Lacipirellula limnantheis
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llh03032
]
I41_20260 (topA)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_20260 (topA)
Enzymes [BR:
llh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I41_20260 (topA)
DNA replication proteins [BR:
llh03032
]
Prokaryotic type
DNA Topoisomerases
I41_20260 (topA)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I41_20260 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QDT72841
UniProt:
A0A517TWU9
LinkDB
All DBs
Position
2467318..2470035
Genome browser
AA seq
905 aa
AA seq
DB search
MAKKSSPSESAGQALVIVESPAKARTIGKYLGKNFRVEASIGHVRDLPQGAKQVPAEYKK
ESWANLGVNVTDGFTPIYVIPPGKTKQIKLLKDQLKGANALYLATDEDREGEAISWHLLE
ILKPKVPVHRLVFHEITKDAIQAAIESPRQVDEGLVRAQETRRILDRLYGYEVSPLLWRK
VRPKLSAGRVQSVAVRLIVERERERMAFVSATWWDLLGSFAKVDKQSLEATMISVDGRRI
PAGKDFDSATGKLKNPEMMLLDGPAAAALAARIRSGKFRVASIEDKPYSSKPSPPFTTST
LQQEANRKLGFTARRTMQVAQSLYENGHITYMRTDSTNLASVAIEGARDLVDKNYGSEFL
PAEPRIYRSKVKNAQEAHEAIRPAGHPFELPETMRSQLGVDEFRIFEMIWKRTIASQMAD
ARGRRISITIEGEGCVFQVSGKTIDFPGYLRAYVEGSDDPSAELADQEKVLPSVEVGELL
TCTALDAKEHTTQAPGRYSEASLTKALEERGIGRPSTYASIIDTILARNYVFKKQNALVP
TWVAFSVVQLLEDHLSSLVDYQFTAQMEDDLDAISRGEQESVSYLDKFYYGNGAPGLKKQ
LENKIDEIDPARIGRILIGTPEGQAPVFVRVGRYSPFVEQGDRTGSLPEETPPDEVTLEM
ALALLEQAAQGDEPLGICPDTHKPVYLKTGRFGPYIQRGTPEDEEKPQNASLLKGMSPAD
IDLATALKLLTLPRNLGDHPEQQKPIMAYNGRFGPYVKCGDDTRSLPSDVSPLDVTLEQA
IKLLAEPKTRGRGAAAKKEPLRTFEKASPVTEKPVQVLDGRYGPYITDGETNLSLRKGMT
VEELTFDEALAMLAEKAAMGPPKKKAAKKKAATKKAAPKKGVTKKPAAKTAKKATKKVAV
DDSSD
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaaaagctccccctccgaatcagccggccaagcgctcgtgatcgtcgaatca
ccggccaaggcgcgaacgatcggcaagtacctcggcaagaattttcgcgtcgaggccagc
atcggccacgttcgcgatttgccgcaaggcgccaagcaagtccccgcggagtataagaag
gagtcgtgggcgaatctgggcgtgaacgtcaccgacggcttcacgccgatctacgtcatc
ccgccgggaaagacaaaacagatcaagctgctcaaagaccaattgaagggcgccaacgct
ctttatctggcgacggacgaggatcgcgaaggggaggcgatcagctggcatctgctggag
atcctcaagccaaaggtgccagtccatcgcttggtgttccacgaaatcaccaaagacgcc
atccaggcggcgatcgagtccccccggcaggtcgacgaagggttagtgcgcgcacaggag
acgcgacgcattctggaccggctgtacggctacgaggtttcgccgctgttgtggcggaag
gttcgcccgaagctatcggccgggcgcgtgcaaagcgtcgcggtgcggctgatcgtcgaa
cgcgagcgcgagcggatggccttcgtctcggccacttggtgggacttgctcggcagcttt
gccaaggtcgacaagcagtcgctcgaggcgacgatgatctcggtcgatggccgtcgaatt
cccgcgggtaaggatttcgattcggcgaccggcaagctgaagaatccggagatgatgctg
ctcgacggcccagcggcggcggcgctggctgcgcgaattcgcagcggaaagttccgcgtc
gcgtcaatcgaggataagccttacagcagcaagccgtcgccgccgttcaccaccagcacg
ctgcagcaggaagctaaccgcaagctcgggttcaccgcgcggcggacgatgcaggtggca
cagagcctctacgaaaacggccacatcacctacatgcgcaccgattcgacaaacctcgcg
tcggttgccatcgaaggcgcgcgcgatctggtcgacaagaactatggcagcgagttcctc
cccgctgagccgcgaatctaccgctccaaagtaaagaacgcccaggaggcgcacgaggcg
atccgcccagcgggccatccgttcgaattgccggaaacgatgcgttcgcagctcggcgtc
gatgagttccgcatcttcgagatgatttggaagcggaccattgcaagccagatggccgac
gcccgcggtcggcggatttcgatcaccatcgaaggcgaaggctgcgtcttccaggtaagc
ggcaagacgattgacttcccgggttacttgcgggcatacgtcgaaggatcggatgatccg
agcgccgagctcgcagatcaagaaaaagtgctccccagcgtcgaagtcggcgaactactg
acgtgcacggcgctcgacgccaaggagcatacgacgcaagcccccggtcgttacagtgaa
gcgtcgctgacgaaggcgctcgaagaacgaggcatcgggcggccaagtacctacgcgtcg
attatcgatacgattctcgcgcgcaattacgtctttaagaagcagaacgcgctggtcccg
acgtgggtggcattttccgtcgtccaactgctggaagaccacctatcgtcgctggtggat
tatcaattcactgcgcaaatggaggacgatctcgacgccattagccgcggcgagcaggag
tcggtcagttacctcgacaagttctattacggcaacggcgctccgggactcaagaaacaa
ctcgagaacaagatcgacgagatcgatccggcccgtatcgggcggattctcatcggcacg
cccgaaggacaggcgccggtgtttgtacgggtcggccgctactcgccgtttgtcgagcag
ggggaccgcacgggttcgctgccggaagagacgcctcccgacgaagtgacgttggaaatg
gcgctcgcgctgctggagcaagcggcgcagggggacgaaccgctcggcatctgccccgac
acgcacaagccggtctacttgaagacgggccgctttggaccctacatccagcgcggcact
cccgaagacgaagagaagccgcagaacgcctcgctgctcaaggggatgagccccgccgac
attgacctggcaacggctctgaaactactgacgctgccgcgcaacctgggcgaccatccc
gagcagcagaagccgatcatggcctacaacggccggtttggcccctatgtgaagtgcggc
gacgacacgcgttcgctgccgagcgacgtctcgccgctcgacgtgacgctggagcaagcg
atcaagctgctcgccgagccgaagacgcgcggccgcggcgcggcagccaagaaggagccg
ctgcgaacctttgagaaagcgtcgccggtgaccgaaaagcccgtgcaggtgctcgacggc
cgctacggcccgtacatcaccgacggcgagacgaatctctcgctgcgaaagggaatgacg
gttgaagagttgaccttcgatgaggcgctcgcgatgctcgctgagaaggccgcgatgggc
ccgccgaaaaagaaggccgcgaagaagaaagcggcgaccaagaaggcggcgccgaaaaag
ggcgtcacgaaaaagccagctgcgaagaccgcaaagaaagcaaccaagaaagttgccgtc
gacgacagcagcgattga
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