Lacipirellula limnantheis: I41_20310
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Entry
I41_20310 CDS
T09857
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K05788
integration host factor subunit beta
Organism
llh
Lacipirellula limnantheis
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llh03032
]
I41_20310 (hup)
03036 Chromosome and associated proteins [BR:
llh03036
]
I41_20310 (hup)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_20310 (hup)
DNA replication proteins [BR:
llh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
I41_20310 (hup)
Chromosome and associated proteins [BR:
llh03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
I41_20310 (hup)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
I41_20310 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
DUF4011
Glyco_trans_1_2
HU-CCDC81_bac_2
RNA_pol_Rpc34
Motif
Other DBs
NCBI-ProteinID:
QDT72846
UniProt:
A0A517TWU0
LinkDB
All DBs
Position
complement(2473102..2473518)
Genome browser
AA seq
138 aa
AA seq
DB search
MTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEDHRIELRNFGVFEVKRRAARKA
RNPRTGEKVFVPEKFVVTFKPGKEMEERVRELERRANEAARQQAMQSNHAAATPPSASPP
HETFGSATSYEPGSGNSA
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagaaagaaatcgtgaagaccatctcagaggagatcggcctcacgcaattgaag
accaaagagatcgtccagaagacgttcgacgccatcgtcgaaacgctggtcgaagatcat
cggattgagctgcggaattttggcgtcttcgaagtgaagcgccgggccgctcgcaaggcg
cgcaacccgcgcaccggtgagaaagtctttgtccccgaaaagtttgtggtcaccttcaaa
ccgggcaaagagatggaggagcgagttcgcgagctggaacgtcgcgcgaatgaggccgct
cgccaacaggcgatgcagagcaatcacgccgcggcgacgccgccgtcagcttctccgccg
cacgaaacatttggctccgcaacgagttacgaacccggttcgggcaactcggcgtag
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integrated database retrieval system
