Lacipirellula limnantheis: I41_31720
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Entry
I41_31720 CDS
T09857
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
llh
Lacipirellula limnantheis
Pathway
llh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I41_31720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llh03021
]
I41_31720
03019 Messenger RNA biogenesis [BR:
llh03019
]
I41_31720
Transcription machinery [BR:
llh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I41_31720
Messenger RNA biogenesis [BR:
llh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I41_31720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
Spore_III_AA
AdSDV_VP1
Motif
Other DBs
NCBI-ProteinID:
QDT73980
UniProt:
A0A517U026
LinkDB
All DBs
Position
3967157..3968638
Genome browser
AA seq
493 aa
AA seq
DB search
MSETGNRGPRYSRPQQPFPRQRRSYDEGVAPIDRQRLAELEQEEPLSFAEELDKAAERVR
RVGSSIERTDKPDPNIHIAALQRLSMPELIEMAEEENIEEASGLKKQDLIFRILKSRVKF
NGMMSGEGTLEILPDGFGFLRSPDYHYLSCPDDIYVSPSQIRRFGLHTGATVSGTIRPPK
ENERYFALLRVESINGQDPNMVNKKVLFDNLTPVHPDERIRMEIGAEEIGMRVVDMIVPI
GFGQRGLIVSPPRAGKTVLMQKMAKSVLTNYPDAYVIMLLIDERPEEVTDMERQVKGPNC
EVISSTFDETSARHVQVAEMVIEKAKRMVEYGRDVIIFLDSITRLARAWNSECPSSGKLL
SGGIDANAMQRPKRFFGSARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNQEIVL
DRRLVDRRVWPAIDITKSGTRREEMLMDPEEYRRVCLLRRVLNEMNGPDAMDLLTTRLRK
TASNAEFLMSIKD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaccggcaaccgtggaccgcggtacagtcggccccaacagcccttcccgcgg
cagcgccgttcgtacgacgaaggcgtggcccccatcgatcgccagcgtctcgctgagctc
gagcaggaagaaccgctgtcattcgccgaggaactcgacaaggccgccgagcgcgtccgc
cgcgtcggcagcagcatcgagcgcaccgacaagcccgatccgaacatccacatcgccgcc
ctccagcgattgagcatgcccgagcttatcgaaatggcggaagaagagaacatcgaagaa
gcgagcggcctgaagaagcaggatctgatcttccgcatcctcaagtcacgcgtgaagttc
aacggcatgatgtcgggcgaagggacgctcgaaatcctccccgacggcttcggcttcctg
cgttcgcccgactatcactacctctcctgcccggacgacatttacgtctccccgagccag
atccgccgcttcggcctccacaccggcgccacggtctccggcacaatccgtccgcccaag
gaaaacgagcgttacttcgccctgctccgggtcgagtcgatcaacggccaagacccgaac
atggtcaataagaaggtcttgttcgacaacctcacgccggtccaccccgacgaacggatc
cgcatggagatcggcgccgaggaaatcggcatgcgggtggtcgacatgatcgtcccgatc
ggtttcggccagcgcggtctgatcgtcagccccccgcgggccggcaagactgtgctgatg
cagaaaatggccaagtcggttctcacgaactaccccgacgcctacgtcatcatgctgctg
atcgacgagcgtccggaagaagtgaccgacatggagcgccaagtgaagggccccaactgc
gaggttatctccagcaccttcgacgaaacgagcgcccgccacgtccaggtcgccgaaatg
gtgatcgagaaggcgaagcgaatggtcgagtatggccgcgacgtgatcatcttcctcgat
tcgatcacccgcctcgctcgcgcctggaacagcgaatgccccagttccggcaagctcctg
tcgggcggcatcgacgccaacgccatgcagcggccgaagcgcttcttcggctcggcccgc
aaggtcgaggaagggggctcgctcaccatcatcgccacggcgctggtcgacaccggcagc
cgcatggacgaggtgatctttgaggagttcaagggaacgggcaaccaggaaatcgtcctt
gatcgccgcctggtcgatcgtcgcgtctggcccgccatcgacatcaccaagagcggcacc
cgccgcgaagagatgctgatggaccccgaggaataccgccgcgtctgcctgctgcgccgc
gtgctgaacgagatgaacggccccgacgccatggacctgctcaccacccggctccgcaag
acggcgtcgaacgccgagttcttgatgagcatcaaggactag
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