KEGG   Lacipirellula limnantheis: I41_31720
Entry
I41_31720         CDS       T09857                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
llh  Lacipirellula limnantheis
Pathway
llh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:llh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I41_31720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:llh03021]
    I41_31720
   03019 Messenger RNA biogenesis [BR:llh03019]
    I41_31720
Transcription machinery [BR:llh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     I41_31720
Messenger RNA biogenesis [BR:llh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     I41_31720
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N S1CSD-TOTE-2 OB_RNB Spore_III_AA AdSDV_VP1
Other DBs
NCBI-ProteinID: QDT73980
UniProt: A0A517U026
LinkDB
Position
3967157..3968638
AA seq 493 aa
MSETGNRGPRYSRPQQPFPRQRRSYDEGVAPIDRQRLAELEQEEPLSFAEELDKAAERVR
RVGSSIERTDKPDPNIHIAALQRLSMPELIEMAEEENIEEASGLKKQDLIFRILKSRVKF
NGMMSGEGTLEILPDGFGFLRSPDYHYLSCPDDIYVSPSQIRRFGLHTGATVSGTIRPPK
ENERYFALLRVESINGQDPNMVNKKVLFDNLTPVHPDERIRMEIGAEEIGMRVVDMIVPI
GFGQRGLIVSPPRAGKTVLMQKMAKSVLTNYPDAYVIMLLIDERPEEVTDMERQVKGPNC
EVISSTFDETSARHVQVAEMVIEKAKRMVEYGRDVIIFLDSITRLARAWNSECPSSGKLL
SGGIDANAMQRPKRFFGSARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNQEIVL
DRRLVDRRVWPAIDITKSGTRREEMLMDPEEYRRVCLLRRVLNEMNGPDAMDLLTTRLRK
TASNAEFLMSIKD
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgtcagagaccggcaaccgtggaccgcggtacagtcggccccaacagcccttcccgcgg
cagcgccgttcgtacgacgaaggcgtggcccccatcgatcgccagcgtctcgctgagctc
gagcaggaagaaccgctgtcattcgccgaggaactcgacaaggccgccgagcgcgtccgc
cgcgtcggcagcagcatcgagcgcaccgacaagcccgatccgaacatccacatcgccgcc
ctccagcgattgagcatgcccgagcttatcgaaatggcggaagaagagaacatcgaagaa
gcgagcggcctgaagaagcaggatctgatcttccgcatcctcaagtcacgcgtgaagttc
aacggcatgatgtcgggcgaagggacgctcgaaatcctccccgacggcttcggcttcctg
cgttcgcccgactatcactacctctcctgcccggacgacatttacgtctccccgagccag
atccgccgcttcggcctccacaccggcgccacggtctccggcacaatccgtccgcccaag
gaaaacgagcgttacttcgccctgctccgggtcgagtcgatcaacggccaagacccgaac
atggtcaataagaaggtcttgttcgacaacctcacgccggtccaccccgacgaacggatc
cgcatggagatcggcgccgaggaaatcggcatgcgggtggtcgacatgatcgtcccgatc
ggtttcggccagcgcggtctgatcgtcagccccccgcgggccggcaagactgtgctgatg
cagaaaatggccaagtcggttctcacgaactaccccgacgcctacgtcatcatgctgctg
atcgacgagcgtccggaagaagtgaccgacatggagcgccaagtgaagggccccaactgc
gaggttatctccagcaccttcgacgaaacgagcgcccgccacgtccaggtcgccgaaatg
gtgatcgagaaggcgaagcgaatggtcgagtatggccgcgacgtgatcatcttcctcgat
tcgatcacccgcctcgctcgcgcctggaacagcgaatgccccagttccggcaagctcctg
tcgggcggcatcgacgccaacgccatgcagcggccgaagcgcttcttcggctcggcccgc
aaggtcgaggaagggggctcgctcaccatcatcgccacggcgctggtcgacaccggcagc
cgcatggacgaggtgatctttgaggagttcaagggaacgggcaaccaggaaatcgtcctt
gatcgccgcctggtcgatcgtcgcgtctggcccgccatcgacatcaccaagagcggcacc
cgccgcgaagagatgctgatggaccccgaggaataccgccgcgtctgcctgctgcgccgc
gtgctgaacgagatgaacggccccgacgccatggacctgctcaccacccggctccgcaag
acggcgtcgaacgccgagttcttgatgagcatcaaggactag

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