Lacipirellula limnantheis: I41_39380
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Entry
I41_39380 CDS
T09857
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
llh
Lacipirellula limnantheis
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
llh03016
]
I41_39380 (rtcB_2)
Enzymes [BR:
llh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I41_39380 (rtcB_2)
Transfer RNA biogenesis [BR:
llh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I41_39380 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
I41_39380 (rtcB_2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT74739
UniProt:
A0A517U287
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All DBs
Position
4850363..4851880
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AA seq
505 aa
AA seq
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MSIATENDSSSAPSKFQMIADGEATAILPTGGKQKPITVIGTEAIRATFDDLCLQQAINS
RLAPGVTDLVLNPDAHCGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQTSLPADAILD
RPTRRALINAICERTPTGAGRGQRNAPKSRHVGEALGKRVLVEGASRGVCEELGIPPEWA
ARCEDSAHVGHDDSTGALALRLEQLLPQMHRFDAKMTQLGSYGGGNHFGECEVVHVEAND
RAREAARVFGLVDGGVAFLSHCGSRGIGHQLASGQFKALQGKFTQWDIPLPGGDRELVYA
PLGTPEADAYIDDMALGANFATVNHLLINALVLEAFQEVLPGVAGQLVYFISHNIARKEV
VNNNIAWVHRKGATRAFPAGHHALRDTPFAETGHPILLPGNPQAGSVVMAADAGAAVSCY
SVNHGAGRQLGRKAAKRALDQKEVDRSFEEADILTNCRAYPIDEAPAAYKDFDEVLRSVK
SAGLASEVARLKAKFVIKDGDQADD
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgccactgaaaacgattcgtcctcggcgccgagcaagttccagatgatcgcc
gacggcgaagcgaccgccatcctgccgaccggcggcaagcaaaagccgatcaccgtcatc
ggtaccgaggcgattcgcgccaccttcgacgacctttgcttgcagcaggcgatcaattct
cggctggcgcccggcgtcaccgatctggtgctgaatcccgacgcccattgcggctacggc
gcgccggtcggctgcgtcatggtgtcgccgacgcacatctacccgggccccgtcggcgtc
gatatcaagtgttcgatgagcctgctgcaaaccagcctaccggccgacgcgattctcgac
cggccgacgcggcgtgcgctcatcaacgccatctgcgaacgcaccccaaccggcgccggc
cgcggccagcgcaacgcgccgaagtcgcgccacgttggcgaagccctcggtaagcgcgtt
ctcgtggaaggagcctcgcgcggcgtttgcgaagaactcggcatcccacccgagtgggct
gcgcgctgcgaagactccgcgcatgtgggccacgacgactcgaccggcgccctggcgctg
cggctggagcaactactgccacagatgcaccgcttcgacgcgaagatgacgcagctcggc
tcctacggcggcggcaaccatttcggcgagtgcgaagtggtgcatgtggaagcgaacgat
cgtgcgcgcgaagcggcgcgggttttcggactcgtcgacggcggcgtggccttcctgtcg
cactgcggctcgcgcggcatcggccatcaattggcgtcggggcagttcaaggccctccaa
ggtaagtttacccagtgggacatcccccttcccggcggcgaccgcgaactcgtctacgcc
ccgctcggcacccccgaggccgatgcgtacatcgatgacatggcgctcggagccaacttc
gcaaccgtgaatcatctgttgatcaatgcgctcgtgctggaagcattccaagaagtgctg
ccgggcgtcgccggccaactggtctatttcatcagccacaacatcgcgcgcaaggaagtg
gtgaacaacaatatcgcctgggtccatcgcaagggagcgacgcgcgccttcccggccggc
caccacgcgctgcgcgacacgccgttcgcggaaacgggccacccgattttgctccccggc
aatccacaggcaggttcggtcgtgatggccgccgatgcaggcgccgcggtcagctgctac
agcgtcaaccacggcgcgggccggcaactcggccggaaggcggcgaagcgtgcgctcgat
cagaaagaggtcgaccgctcattcgaagaggccgacatccttaccaattgccgtgcctac
ccgatcgacgaagcgcccgcggcgtacaaagatttcgacgaagtgctgcgttcggtgaag
agcgctgggctggcgagcgaagtggcgcggttgaaggcgaagtttgtcatcaaggatgga
gaccaagcggacgattga
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