Lacipirellula limnantheis: I41_41840
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Entry
I41_41840 CDS
T09857
Symbol
rpoA_2
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
llh
Lacipirellula limnantheis
Pathway
llh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I41_41840 (rpoA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llh03021
]
I41_41840 (rpoA_2)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_41840 (rpoA_2)
Enzymes [BR:
llh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I41_41840 (rpoA_2)
Transcription machinery [BR:
llh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I41_41840 (rpoA_2)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I41_41840 (rpoA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_1
TPR_14
TPR_17
TPR_19
TPR_16
TPR_8
ANAPC3
TPR_12
HAT_PRP39_C
TPR_11
MIT
ARM_TT21
NatA_aux_su
Motif
Other DBs
NCBI-ProteinID:
QDT74978
UniProt:
A0A517U2X9
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All DBs
Position
5132927..5134252
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AA seq
441 aa
AA seq
DB search
MSPVAEFDLRQTVISNSTFGPNEIKQIAHAISSDYNNFRTLRDATNELAQQTARTPAASA
RLGVCQYLIGRYGDAVQTLTNADGGALTHFYLGKSYLALDRYAEALKGYESAERAGYNKD
EVTLAKADAMRYSGDAAGALKVLDGLSGAVEQTAEYLYQRAATVAALGGNRSEVIALLER
AIDADSTHPGVLFSLALENDRHGNDDYARQLYERAAKQFPTNVGTLINLGLLYEDIEHFE
RAKQCYLRILDVFPGHERARLYFKDADASRDMYYDEEARRRQDRLSQILSVPVTDFELSV
RSRNCLQKMGIMTLGDLTETTEQELLSSKNFGETSLVEIREMLSSKGLELGQFASTKWQE
EPVFESNAMSEDERALLDRPIADLNLSVRARKCMVRLGLTTIGELLRRTGDDLLECKNFG
VTSLNEVREKLTANGLKLRGD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccagttgcggaattcgacctgcgtcaaaccgtcatttccaatagcacgttcggg
ccaaacgagatcaagcagatcgcgcacgccatttcgagcgactataacaatttccgcacc
ctgcgggacgcgaccaacgagttggcgcagcaaactgcccggaccccagcagcctcggcc
cgcctgggtgtctgccaatatttgatcggccgctacggcgacgccgtgcaaacgttgaca
aacgccgacggcggcgccctgacccatttctacttgggtaagtcctatctcgctctcgac
cgctacgcagaagctctcaagggttacgaatcagccgagcgcgccggctacaacaaggac
gaggtcacgctcgccaaggccgacgcgatgcgctatagcggcgacgccgccggcgccctc
aaggtcttggacggcctctccggggccgtggagcaaacagccgaatacctttatcaacgc
gccgccacggtcgccgccttgggtggaaaccgcagcgaggtcattgccttgctagaacgg
gcgatcgacgccgactcaacccaccccggcgtcctattcagcctcgccctggagaatgac
cgccacggcaacgacgattacgcccgccaactctacgagcgagccgccaagcagttcccg
accaatgtcggcacgctgatcaatcttggcctgctctatgaagacatcgagcacttcgag
cgggccaagcaatgctatctgcgcattctcgacgtctttccgggccacgaacgggctcgg
ctgtacttcaaggacgccgacgcttcccgcgatatgtactacgacgaggaagcccggcgc
cgccaggaccgactgtcgcaaatcctcagcgtgccggtcaccgacttcgaactgtcggtt
cgtagccgcaattgcctgcagaagatgggcatcatgacgctcggcgatctcacggaaacg
accgagcaggagttgctctcgagcaagaacttcggcgaaacgtcgctcgtcgagattcgc
gagatgctctcctcgaagggcttggaacttggccagttcgcttccacgaagtggcaggaa
gagccggtcttcgagtcgaacgccatgagcgaagacgagcgtgccctcctcgaccgcccg
atcgccgacctgaatctctcggtgcgggcgcgcaagtgcatggtccgcctcggtctcacg
accattggcgagttgctccgccggacgggcgacgacctgctggagtgcaagaacttcggc
gtcacgagcctgaacgaggtccgggaaaagctcaccgccaacggcctgaaactgcgcggc
gactga
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